Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5740 and GFF5741 overlap by 4 nucleotides GFF5741 and GFF5742 overlap by 4 nucleotides GFF5742 and GFF5743 overlap by 8 nucleotides GFF5743 and GFF5744 are separated by 27 nucleotides GFF5744 and GFF5745 are separated by 154 nucleotides
GFF5740 - Flagellar biosynthesis protein FliP, at 114,036 to 114,794
GFF5740
GFF5741 - Flagellar biosynthesis protein FliO, at 114,791 to 115,294
GFF5741
GFF5742 - Flagellar motor switch protein FliN, at 115,291 to 115,761
GFF5742
GFF5743 - Flagellar motor switch protein FliM, at 115,754 to 116,758
GFF5743
GFF5744 - Flagellar basal body-associated protein FliL, at 116,786 to 117,289
GFF5744
GFF5745 - Flagellar hook-length control protein FliK, at 117,444 to 118,883
GFF5745
Position (kb) 115
116
117 Strain fitness (log2 ratio) -1
0
1
2 at 115.355 kb on + strand, within GFF5742 at 115.356 kb on - strand, within GFF5742 at 115.356 kb on - strand, within GFF5742 at 115.397 kb on + strand, within GFF5742 at 115.819 kb on - strand at 116.215 kb on - strand, within GFF5743 at 116.215 kb on - strand, within GFF5743 at 116.340 kb on + strand, within GFF5743 at 116.341 kb on - strand, within GFF5743 at 116.752 kb on - strand at 117.284 kb on - strand at 117.315 kb on + strand at 117.315 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 115,355 + GFF5742 0.14 -0.6 115,356 - GFF5742 0.14 -0.3 115,356 - GFF5742 0.14 -0.1 115,397 + GFF5742 0.23 +0.7 115,819 - +0.8 116,215 - GFF5743 0.46 +1.8 116,215 - GFF5743 0.46 +0.8 116,340 + GFF5743 0.58 +0.0 116,341 - GFF5743 0.58 +0.8 116,752 - +1.8 117,284 - +0.0 117,315 + -0.5 117,315 + -0.3
Or see this region's nucleotide sequence