Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5727 and GFF5728 are separated by 104 nucleotides GFF5728 and GFF5729 are separated by 16 nucleotides
GFF5727 - Methyl-accepting chemotaxis sensor/transducer protein, at 95,876 to 97,612
GFF5727
GFF5728 - Methyl-accepting chemotaxis sensor/transducer protein, at 97,717 to 99,282
GFF5728
GFF5729 - Methyl-accepting chemotaxis sensor/transducer protein, at 99,299 to 100,903
GFF5729
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -1
0
1 at 97.616 kb on + strand at 98.060 kb on - strand, within GFF5728 at 98.060 kb on - strand, within GFF5728 at 98.192 kb on - strand, within GFF5728 at 98.270 kb on - strand, within GFF5728 at 98.587 kb on - strand, within GFF5728 at 99.392 kb on + strand at 99.392 kb on + strand at 99.392 kb on + strand at 99.393 kb on - strand at 99.393 kb on - strand at 99.576 kb on - strand, within GFF5729 at 99.576 kb on - strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729 at 99.629 kb on + strand, within GFF5729
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 97,616 + +0.3 98,060 - GFF5728 0.22 -0.7 98,060 - GFF5728 0.22 +0.0 98,192 - GFF5728 0.30 -0.4 98,270 - GFF5728 0.35 +0.8 98,587 - GFF5728 0.56 -0.4 99,392 + -0.5 99,392 + -0.2 99,392 + +0.8 99,393 - -0.8 99,393 - -0.1 99,576 - GFF5729 0.17 -0.3 99,576 - GFF5729 0.17 +0.6 99,629 + GFF5729 0.21 -0.7 99,629 + GFF5729 0.21 -1.4 99,629 + GFF5729 0.21 +0.6 99,629 + GFF5729 0.21 -0.7 99,629 + GFF5729 0.21 -1.2 99,629 + GFF5729 0.21 +0.1 99,629 + GFF5729 0.21 -1.4
Or see this region's nucleotide sequence