Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5679 and GFF5680 are separated by 83 nucleotides GFF5680 and GFF5681 are separated by 22 nucleotides
GFF5679 - Uncharacterized MFS-type transporter, at 53,618 to 54,955
GFF5679
GFF5680 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 55,039 to 55,725
GFF5680
GFF5681 - Predicted gluconate TRAP family transporter, DctM subunit, at 55,748 to 57,688
GFF5681
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.140 kb on + strand, within GFF5679 at 54.140 kb on + strand, within GFF5679 at 54.140 kb on + strand, within GFF5679 at 54.141 kb on - strand, within GFF5679 at 54.141 kb on - strand, within GFF5679 at 54.203 kb on + strand, within GFF5679 at 54.204 kb on - strand, within GFF5679 at 54.204 kb on - strand, within GFF5679 at 54.204 kb on - strand, within GFF5679 at 54.204 kb on - strand, within GFF5679 at 54.209 kb on + strand, within GFF5679 at 54.209 kb on + strand, within GFF5679 at 54.209 kb on + strand, within GFF5679 at 54.209 kb on + strand, within GFF5679 at 54.209 kb on + strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.210 kb on - strand, within GFF5679 at 54.254 kb on + strand, within GFF5679 at 54.255 kb on - strand, within GFF5679 at 54.255 kb on - strand, within GFF5679 at 54.255 kb on - strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.263 kb on + strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.264 kb on - strand, within GFF5679 at 54.329 kb on + strand, within GFF5679 at 54.329 kb on + strand, within GFF5679 at 54.329 kb on + strand, within GFF5679 at 54.329 kb on + strand, within GFF5679 at 54.330 kb on - strand, within GFF5679 at 54.437 kb on + strand, within GFF5679 at 54.437 kb on + strand, within GFF5679 at 54.437 kb on + strand, within GFF5679 at 54.437 kb on + strand, within GFF5679 at 54.437 kb on + strand, within GFF5679 at 54.438 kb on - strand, within GFF5679 at 54.438 kb on - strand, within GFF5679 at 54.438 kb on - strand, within GFF5679 at 54.438 kb on - strand, within GFF5679 at 54.438 kb on - strand, within GFF5679 at 54.488 kb on + strand, within GFF5679 at 54.488 kb on + strand, within GFF5679 at 54.488 kb on + strand, within GFF5679 at 54.488 kb on + strand, within GFF5679 at 54.489 kb on - strand, within GFF5679 at 54.489 kb on - strand, within GFF5679 at 54.489 kb on - strand, within GFF5679 at 54.489 kb on - strand, within GFF5679 at 54.509 kb on + strand, within GFF5679 at 54.725 kb on + strand, within GFF5679 at 54.725 kb on + strand, within GFF5679 at 54.725 kb on + strand, within GFF5679 at 54.725 kb on + strand, within GFF5679 at 54.726 kb on - strand, within GFF5679 at 54.726 kb on - strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 55.026 kb on + strand at 55.026 kb on + strand at 55.026 kb on + strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.157 kb on - strand, within GFF5680 at 55.157 kb on - strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 56.015 kb on + strand, within GFF5681 at 56.247 kb on + strand, within GFF5681 at 56.247 kb on + strand, within GFF5681 at 56.248 kb on - strand, within GFF5681 at 56.248 kb on - strand, within GFF5681 at 56.274 kb on + strand, within GFF5681 at 56.275 kb on - strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,140 + GFF5679 0.39 +0.1 54,140 + GFF5679 0.39 -0.4 54,140 + GFF5679 0.39 -0.3 54,141 - GFF5679 0.39 -0.4 54,141 - GFF5679 0.39 -0.1 54,203 + GFF5679 0.44 -0.3 54,204 - GFF5679 0.44 +0.8 54,204 - GFF5679 0.44 +0.2 54,204 - GFF5679 0.44 +0.1 54,204 - GFF5679 0.44 +0.1 54,209 + GFF5679 0.44 -0.8 54,209 + GFF5679 0.44 +2.0 54,209 + GFF5679 0.44 +0.2 54,209 + GFF5679 0.44 +0.3 54,209 + GFF5679 0.44 -0.9 54,210 - GFF5679 0.44 +0.2 54,210 - GFF5679 0.44 +0.3 54,210 - GFF5679 0.44 -1.1 54,210 - GFF5679 0.44 +0.1 54,210 - GFF5679 0.44 -0.2 54,210 - GFF5679 0.44 -0.1 54,254 + GFF5679 0.48 +0.5 54,255 - GFF5679 0.48 -0.6 54,255 - GFF5679 0.48 -0.2 54,255 - GFF5679 0.48 +2.4 54,263 + GFF5679 0.48 -1.1 54,263 + GFF5679 0.48 +0.1 54,263 + GFF5679 0.48 -0.8 54,263 + GFF5679 0.48 -0.9 54,263 + GFF5679 0.48 -0.1 54,263 + GFF5679 0.48 -1.5 54,263 + GFF5679 0.48 +0.2 54,263 + GFF5679 0.48 -0.2 54,263 + GFF5679 0.48 -0.1 54,263 + GFF5679 0.48 -0.3 54,263 + GFF5679 0.48 +0.5 54,264 - GFF5679 0.48 -1.6 54,264 - GFF5679 0.48 +0.7 54,264 - GFF5679 0.48 +0.4 54,264 - GFF5679 0.48 -0.3 54,264 - GFF5679 0.48 -0.2 54,264 - GFF5679 0.48 +1.2 54,264 - GFF5679 0.48 -0.6 54,264 - GFF5679 0.48 -0.4 54,264 - GFF5679 0.48 -0.1 54,264 - GFF5679 0.48 +1.0 54,264 - GFF5679 0.48 -0.2 54,264 - GFF5679 0.48 +0.3 54,329 + GFF5679 0.53 -0.6 54,329 + GFF5679 0.53 +1.6 54,329 + GFF5679 0.53 +0.2 54,329 + GFF5679 0.53 -0.3 54,330 - GFF5679 0.53 -0.5 54,437 + GFF5679 0.61 -0.4 54,437 + GFF5679 0.61 -0.5 54,437 + GFF5679 0.61 +0.2 54,437 + GFF5679 0.61 +0.3 54,437 + GFF5679 0.61 +0.5 54,438 - GFF5679 0.61 +0.1 54,438 - GFF5679 0.61 +0.3 54,438 - GFF5679 0.61 -0.9 54,438 - GFF5679 0.61 -1.2 54,438 - GFF5679 0.61 +0.2 54,488 + GFF5679 0.65 +1.0 54,488 + GFF5679 0.65 -0.4 54,488 + GFF5679 0.65 -0.3 54,488 + GFF5679 0.65 -0.6 54,489 - GFF5679 0.65 -0.2 54,489 - GFF5679 0.65 +0.2 54,489 - GFF5679 0.65 -0.8 54,489 - GFF5679 0.65 +0.1 54,509 + GFF5679 0.67 +0.4 54,725 + GFF5679 0.83 -0.3 54,725 + GFF5679 0.83 -0.2 54,725 + GFF5679 0.83 -0.8 54,725 + GFF5679 0.83 -0.3 54,726 - GFF5679 0.83 -0.6 54,726 - GFF5679 0.83 -2.0 54,770 + GFF5679 0.86 -0.2 54,770 + GFF5679 0.86 -0.4 54,770 + GFF5679 0.86 -0.3 54,770 + GFF5679 0.86 -0.6 54,770 + GFF5679 0.86 -0.9 54,771 - GFF5679 0.86 +0.5 54,771 - GFF5679 0.86 +1.5 54,771 - GFF5679 0.86 -0.2 54,771 - GFF5679 0.86 -0.6 54,771 - GFF5679 0.86 +1.8 54,776 + GFF5679 0.87 -1.1 54,776 + GFF5679 0.87 +1.2 54,776 + GFF5679 0.87 +1.0 54,776 + GFF5679 0.87 -1.1 54,776 + GFF5679 0.87 -0.2 54,776 + GFF5679 0.87 -1.7 54,777 - GFF5679 0.87 +0.7 54,777 - GFF5679 0.87 -0.7 54,777 - GFF5679 0.87 -0.2 54,777 - GFF5679 0.87 -0.1 54,875 + -0.4 54,875 + -0.0 54,875 + +0.2 54,875 + +0.2 54,875 + +0.0 54,875 + +0.2 54,875 + +0.1 54,876 - -0.6 54,876 - +0.8 54,876 - +1.2 54,876 - +1.1 54,876 - -0.6 54,876 - -0.4 54,876 - -1.6 54,876 - -0.1 54,876 - -0.2 54,876 - -0.3 54,876 - +0.2 54,876 - +1.4 54,887 + +0.2 54,887 + -0.3 54,887 + +0.5 54,887 + +0.8 54,887 + -0.5 54,887 + +0.0 54,887 + -1.5 54,887 + -0.4 54,887 + +0.3 54,888 - +0.2 54,888 - +0.5 54,888 - -0.2 54,888 - +0.3 54,888 - -0.3 54,888 - -0.5 54,888 - +0.7 54,888 - +1.6 54,888 - +0.5 55,026 + +0.1 55,026 + -1.5 55,026 + -0.8 55,027 - -1.5 55,027 - -0.9 55,027 - -0.0 55,027 - -1.4 55,027 - +1.2 55,156 + GFF5680 0.17 -1.4 55,156 + GFF5680 0.17 -0.6 55,156 + GFF5680 0.17 +0.3 55,156 + GFF5680 0.17 -0.5 55,156 + GFF5680 0.17 +0.1 55,156 + GFF5680 0.17 +1.4 55,156 + GFF5680 0.17 +1.2 55,156 + GFF5680 0.17 +0.3 55,156 + GFF5680 0.17 -0.5 55,157 - GFF5680 0.17 -0.2 55,157 - GFF5680 0.17 +1.0 55,486 + GFF5680 0.65 -0.6 55,486 + GFF5680 0.65 +0.1 55,486 + GFF5680 0.65 -0.1 55,486 + GFF5680 0.65 +0.1 55,486 + GFF5680 0.65 -0.2 55,487 - GFF5680 0.65 -0.3 55,487 - GFF5680 0.65 +0.2 55,487 - GFF5680 0.65 +0.5 55,487 - GFF5680 0.65 +0.5 55,487 - GFF5680 0.65 +0.8 55,487 - GFF5680 0.65 +0.2 55,818 + -0.8 55,818 + +0.2 55,818 + -0.2 55,818 + +0.0 55,818 + -1.2 55,818 + -0.4 55,819 - +1.4 55,819 - -0.3 55,819 - -1.0 55,819 - +0.0 55,878 + +0.1 55,878 + +0.6 55,878 + +0.2 55,878 + -0.6 55,878 + -0.6 55,879 - -1.5 55,879 - -1.4 55,879 - -0.5 55,879 - +0.2 55,879 - +0.8 55,881 + -0.4 55,881 + -0.9 55,881 + -0.7 55,881 + -0.8 55,882 - -0.1 55,882 - +0.0 55,882 - +0.2 55,882 - -0.8 55,882 - +0.6 55,882 - +0.0 55,944 + GFF5681 0.10 -0.2 55,944 + GFF5681 0.10 -0.1 55,944 + GFF5681 0.10 -1.1 55,944 + GFF5681 0.10 +0.5 55,944 + GFF5681 0.10 -0.4 55,944 + GFF5681 0.10 -1.0 55,944 + GFF5681 0.10 -1.6 55,944 + GFF5681 0.10 -0.2 55,944 + GFF5681 0.10 +0.8 55,945 - GFF5681 0.10 +0.8 55,945 - GFF5681 0.10 +0.8 55,945 - GFF5681 0.10 -1.0 55,945 - GFF5681 0.10 +0.1 55,945 - GFF5681 0.10 -0.6 55,945 - GFF5681 0.10 -0.5 55,945 - GFF5681 0.10 -1.0 55,945 - GFF5681 0.10 -1.0 55,945 - GFF5681 0.10 +0.4 55,945 - GFF5681 0.10 -1.1 56,015 + GFF5681 0.14 -0.7 56,247 + GFF5681 0.26 +0.6 56,247 + GFF5681 0.26 +0.4 56,248 - GFF5681 0.26 -1.9 56,248 - GFF5681 0.26 -0.3 56,274 + GFF5681 0.27 +0.1 56,275 - GFF5681 0.27 -0.5 56,709 + GFF5681 0.50 +0.6 56,709 + GFF5681 0.50 +0.4 56,709 + GFF5681 0.50 -1.2 56,709 + GFF5681 0.50 -0.1 56,710 - GFF5681 0.50 -0.4 56,710 - GFF5681 0.50 +1.4 56,710 - GFF5681 0.50 -0.3 56,710 - GFF5681 0.50 +0.7
Or see this region's nucleotide sequence