Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF558 and GFF559 are separated by 727 nucleotides GFF559 and GFF560 are separated by 197 nucleotides
GFF558 - hypothetical protein, at 600,585 to 604,352
GFF558
GFF559 - FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 605,080 to 605,931
GFF559
GFF560 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 606,129 to 607,373
GFF560
Position (kb) 605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.138 kb on + strand at 604.139 kb on - strand at 604.139 kb on - strand at 604.139 kb on - strand at 604.139 kb on - strand at 604.139 kb on - strand at 604.139 kb on - strand at 604.342 kb on - strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.398 kb on + strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.399 kb on - strand at 604.479 kb on - strand at 604.572 kb on + strand at 604.572 kb on + strand at 604.572 kb on + strand at 604.572 kb on + strand at 604.572 kb on + strand at 604.572 kb on + strand at 604.573 kb on - strand at 604.573 kb on - strand at 604.732 kb on + strand at 604.732 kb on + strand at 604.733 kb on - strand at 604.733 kb on - strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.765 kb on + strand at 604.766 kb on - strand at 604.766 kb on - strand at 604.766 kb on - strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.822 kb on + strand at 604.823 kb on - strand at 604.823 kb on - strand at 604.830 kb on + strand at 604.864 kb on - strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.873 kb on + strand at 604.874 kb on - strand at 604.874 kb on - strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.965 kb on + strand at 604.966 kb on - strand at 604.966 kb on - strand at 604.966 kb on - strand at 604.966 kb on - strand at 604.966 kb on - strand at 605.001 kb on + strand at 605.002 kb on - strand at 605.002 kb on - strand at 605.002 kb on - strand at 605.114 kb on + strand at 605.157 kb on + strand at 605.157 kb on + strand at 605.157 kb on + strand at 605.157 kb on + strand at 605.157 kb on + strand at 605.158 kb on - strand at 605.158 kb on - strand at 605.158 kb on - strand at 605.158 kb on - strand at 605.158 kb on - strand at 605.377 kb on + strand, within GFF559 at 605.377 kb on + strand, within GFF559 at 605.377 kb on + strand, within GFF559 at 605.378 kb on - strand, within GFF559 at 605.378 kb on - strand, within GFF559 at 605.378 kb on - strand, within GFF559 at 605.378 kb on - strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.395 kb on + strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.396 kb on - strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.440 kb on + strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.441 kb on - strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.584 kb on + strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.585 kb on - strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.701 kb on + strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.702 kb on - strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.704 kb on + strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.705 kb on - strand, within GFF559 at 605.741 kb on - strand, within GFF559 at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.955 kb on + strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.956 kb on - strand at 605.969 kb on + strand at 606.025 kb on + strand at 606.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 604,138 + +0.6 604,138 + +0.4 604,138 + -0.3 604,138 + +0.0 604,138 + +2.6 604,138 + +1.2 604,138 + +0.6 604,138 + -0.7 604,138 + +1.1 604,138 + +0.4 604,139 - +0.9 604,139 - -0.6 604,139 - -0.9 604,139 - +0.1 604,139 - +0.5 604,139 - -0.3 604,342 - -1.0 604,398 + -0.2 604,398 + -0.5 604,398 + +0.5 604,398 + -0.6 604,398 + +0.2 604,398 + -0.4 604,398 + +1.2 604,398 + +0.0 604,398 + +0.4 604,399 - +0.3 604,399 - -0.3 604,399 - -0.4 604,399 - +0.7 604,399 - -1.0 604,399 - -0.5 604,399 - +0.8 604,479 - +0.4 604,572 + +0.6 604,572 + +0.0 604,572 + -2.2 604,572 + +0.1 604,572 + +0.1 604,572 + -0.3 604,573 - -0.1 604,573 - -1.0 604,732 + +0.5 604,732 + +0.0 604,733 - -1.8 604,733 - -0.4 604,765 + -1.1 604,765 + -0.5 604,765 + +0.0 604,765 + -0.3 604,765 + -2.2 604,765 + -1.7 604,765 + +0.6 604,766 - -0.1 604,766 - -1.6 604,766 - +0.0 604,822 + -0.4 604,822 + -1.4 604,822 + -0.9 604,822 + -0.6 604,822 + -0.5 604,822 + -0.1 604,822 + +0.1 604,823 - -0.5 604,823 - -0.7 604,830 + +0.2 604,864 - +0.0 604,873 + +0.5 604,873 + -0.3 604,873 + -0.2 604,873 + -0.2 604,873 + +0.3 604,873 + -0.4 604,873 + +0.1 604,874 - -0.2 604,874 - -1.4 604,965 + -0.9 604,965 + +0.1 604,965 + +0.9 604,965 + +0.7 604,965 + -1.3 604,965 + -0.4 604,965 + -1.5 604,965 + +0.0 604,966 - +1.0 604,966 - +1.6 604,966 - +1.6 604,966 - +0.0 604,966 - +0.9 605,001 + -1.4 605,002 - -0.4 605,002 - -1.4 605,002 - +0.0 605,114 + -0.2 605,157 + +0.1 605,157 + -1.1 605,157 + -0.1 605,157 + +1.3 605,157 + +0.6 605,158 - -0.1 605,158 - -0.4 605,158 - -0.6 605,158 - -1.1 605,158 - -0.3 605,377 + GFF559 0.35 -1.0 605,377 + GFF559 0.35 -2.0 605,377 + GFF559 0.35 -0.6 605,378 - GFF559 0.35 +0.4 605,378 - GFF559 0.35 -0.1 605,378 - GFF559 0.35 +0.5 605,378 - GFF559 0.35 -0.0 605,395 + GFF559 0.37 -0.5 605,395 + GFF559 0.37 -1.2 605,395 + GFF559 0.37 -2.4 605,395 + GFF559 0.37 +0.1 605,395 + GFF559 0.37 +1.3 605,395 + GFF559 0.37 +0.7 605,395 + GFF559 0.37 +0.3 605,395 + GFF559 0.37 +1.1 605,395 + GFF559 0.37 +0.1 605,395 + GFF559 0.37 +0.6 605,395 + GFF559 0.37 -2.8 605,396 - GFF559 0.37 -0.2 605,396 - GFF559 0.37 +0.3 605,396 - GFF559 0.37 -1.9 605,396 - GFF559 0.37 +0.0 605,396 - GFF559 0.37 -0.7 605,396 - GFF559 0.37 -0.2 605,396 - GFF559 0.37 +0.0 605,396 - GFF559 0.37 -0.9 605,396 - GFF559 0.37 +0.6 605,396 - GFF559 0.37 +0.6 605,440 + GFF559 0.42 +0.1 605,440 + GFF559 0.42 -0.7 605,440 + GFF559 0.42 +0.0 605,440 + GFF559 0.42 +1.2 605,440 + GFF559 0.42 -0.2 605,440 + GFF559 0.42 -0.2 605,440 + GFF559 0.42 -0.1 605,440 + GFF559 0.42 -1.9 605,440 + GFF559 0.42 +0.0 605,440 + GFF559 0.42 -0.2 605,440 + GFF559 0.42 +0.1 605,440 + GFF559 0.42 +0.1 605,440 + GFF559 0.42 +0.9 605,440 + GFF559 0.42 -0.4 605,440 + GFF559 0.42 +0.4 605,441 - GFF559 0.42 -0.7 605,441 - GFF559 0.42 -2.3 605,441 - GFF559 0.42 +0.0 605,441 - GFF559 0.42 -0.3 605,441 - GFF559 0.42 +0.2 605,441 - GFF559 0.42 -0.1 605,441 - GFF559 0.42 +0.9 605,441 - GFF559 0.42 -0.0 605,441 - GFF559 0.42 +0.0 605,441 - GFF559 0.42 -1.9 605,441 - GFF559 0.42 -0.3 605,441 - GFF559 0.42 -0.8 605,441 - GFF559 0.42 -0.8 605,584 + GFF559 0.59 -1.0 605,584 + GFF559 0.59 +0.1 605,584 + GFF559 0.59 -0.6 605,584 + GFF559 0.59 -0.8 605,584 + GFF559 0.59 -1.0 605,584 + GFF559 0.59 -0.3 605,584 + GFF559 0.59 +0.8 605,584 + GFF559 0.59 -0.7 605,584 + GFF559 0.59 -1.0 605,585 - GFF559 0.59 -0.4 605,585 - GFF559 0.59 -0.5 605,585 - GFF559 0.59 -0.7 605,585 - GFF559 0.59 +0.6 605,585 - GFF559 0.59 -0.7 605,585 - GFF559 0.59 +0.8 605,585 - GFF559 0.59 +0.1 605,701 + GFF559 0.73 +0.6 605,701 + GFF559 0.73 -1.0 605,701 + GFF559 0.73 -1.4 605,701 + GFF559 0.73 -1.0 605,701 + GFF559 0.73 -0.9 605,701 + GFF559 0.73 -0.6 605,701 + GFF559 0.73 +0.4 605,702 - GFF559 0.73 -0.4 605,702 - GFF559 0.73 -0.4 605,702 - GFF559 0.73 +0.4 605,702 - GFF559 0.73 -0.7 605,702 - GFF559 0.73 -1.1 605,702 - GFF559 0.73 -0.9 605,702 - GFF559 0.73 -2.7 605,704 + GFF559 0.73 -1.1 605,704 + GFF559 0.73 +0.2 605,704 + GFF559 0.73 -0.2 605,704 + GFF559 0.73 -0.2 605,704 + GFF559 0.73 -0.7 605,704 + GFF559 0.73 +0.1 605,704 + GFF559 0.73 -0.6 605,704 + GFF559 0.73 +0.6 605,704 + GFF559 0.73 -0.6 605,704 + GFF559 0.73 -1.0 605,704 + GFF559 0.73 -0.5 605,704 + GFF559 0.73 -0.9 605,704 + GFF559 0.73 +1.1 605,704 + GFF559 0.73 +1.0 605,704 + GFF559 0.73 +0.1 605,704 + GFF559 0.73 +1.3 605,704 + GFF559 0.73 -0.4 605,705 - GFF559 0.73 +0.5 605,705 - GFF559 0.73 -0.3 605,705 - GFF559 0.73 -1.6 605,705 - GFF559 0.73 -0.4 605,705 - GFF559 0.73 -0.9 605,705 - GFF559 0.73 -1.4 605,705 - GFF559 0.73 +0.0 605,705 - GFF559 0.73 -1.4 605,705 - GFF559 0.73 +0.3 605,705 - GFF559 0.73 +0.6 605,705 - GFF559 0.73 -1.4 605,705 - GFF559 0.73 -0.8 605,705 - GFF559 0.73 -0.9 605,705 - GFF559 0.73 -0.1 605,705 - GFF559 0.73 -0.9 605,741 - GFF559 0.78 +0.2 605,955 + +0.4 605,955 + -1.3 605,955 + -0.4 605,955 + -0.4 605,955 + +0.8 605,955 + -1.5 605,955 + -0.4 605,955 + +0.0 605,955 + -0.7 605,955 + -1.6 605,955 + -1.2 605,955 + -0.5 605,955 + +0.3 605,955 + +0.2 605,955 + -1.2 605,955 + -0.7 605,956 - -0.7 605,956 - +0.9 605,956 - -0.5 605,956 - -0.3 605,956 - -0.1 605,956 - +1.2 605,956 - +0.2 605,956 - -0.4 605,956 - +0.2 605,956 - +0.6 605,956 - -0.3 605,956 - -1.3 605,969 + -2.0 606,025 + -0.7 606,025 + -2.1
Or see this region's nucleotide sequence