Strain Fitness in Variovorax sp. SCN45 around GFF5517

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
147,923	+		GFF5516	0.43	-0.4
147,923	+		GFF5516	0.43	-0.3
147,923	+		GFF5516	0.43	+0.0
147,923	+		GFF5516	0.43	-0.6
147,923	+		GFF5516	0.43	+0.1
147,923	+		GFF5516	0.43	-0.4
147,923	+		GFF5516	0.43	+0.3
147,923	+		GFF5516	0.43	-0.9
147,923	+		GFF5516	0.43	-0.1
147,923	+		GFF5516	0.43	-0.1
147,923	+		GFF5516	0.43	+1.9
147,923	+		GFF5516	0.43	-0.6
147,923	+		GFF5516	0.43	-0.9
147,923	+		GFF5516	0.43	-0.1
147,923	+		GFF5516	0.43	+0.0
147,924	-		GFF5516	0.43	+0.6
147,924	-		GFF5516	0.43	-0.7
147,924	-		GFF5516	0.43	+0.7
147,924	-		GFF5516	0.43	-0.4
147,924	-		GFF5516	0.43	+1.2
147,924	-		GFF5516	0.43	+0.4
147,924	-		GFF5516	0.43	+0.2
147,924	-		GFF5516	0.43	-0.7
147,924	-		GFF5516	0.43	-0.2
147,924	-		GFF5516	0.43	-0.8
147,924	-		GFF5516	0.43	-0.1
147,941	+		GFF5516	0.45	+0.3
147,941	+		GFF5516	0.45	-0.7
147,941	+		GFF5516	0.45	-0.3
147,942	-		GFF5516	0.45	+0.2
147,942	-		GFF5516	0.45	-0.7
147,942	-		GFF5516	0.45	-0.3
147,942	-		GFF5516	0.45	+0.6
147,942	-		GFF5516	0.45	-1.1
147,942	-		GFF5516	0.45	-0.1
147,942	-		GFF5516	0.45	-0.4
148,109	+		GFF5516	0.56	-0.4
148,109	+		GFF5516	0.56	-2.0
148,109	+		GFF5516	0.56	+0.5
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	+0.3
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	-2.1
148,109	+		GFF5516	0.56	+0.3
148,110	-		GFF5516	0.56	+0.1
148,110	-		GFF5516	0.56	-0.7
148,110	-		GFF5516	0.56	-0.6
148,110	-		GFF5516	0.56	+0.2
148,110	-		GFF5516	0.56	-0.7
148,110	-		GFF5516	0.56	-1.4
148,110	-		GFF5516	0.56	-0.5
148,110	-		GFF5516	0.56	-0.2
148,110	-		GFF5516	0.56	-1.8
148,110	-		GFF5516	0.56	-0.0
148,110	-		GFF5516	0.56	-0.6
148,110	-		GFF5516	0.56	-0.2
148,110	-		GFF5516	0.56	+0.6
148,110	-		GFF5516	0.56	-0.1
148,202	+		GFF5516	0.63	-0.2
148,202	+		GFF5516	0.63	+0.2
148,202	+		GFF5516	0.63	-1.0
148,202	+		GFF5516	0.63	-0.9
148,202	+		GFF5516	0.63	-0.2
148,202	+		GFF5516	0.63	+0.2
148,202	+		GFF5516	0.63	-1.4
148,202	+		GFF5516	0.63	+1.7
148,202	+		GFF5516	0.63	-0.1
148,202	+		GFF5516	0.63	+0.2
148,203	-		GFF5516	0.63	-0.3
148,203	-		GFF5516	0.63	-0.4
148,203	-		GFF5516	0.63	-1.4
148,203	-		GFF5516	0.63	-0.8
148,203	-		GFF5516	0.63	+0.1
148,203	-		GFF5516	0.63	-0.1
148,203	-		GFF5516	0.63	-0.3
148,379	+		GFF5516	0.75	+0.0
148,379	+		GFF5516	0.75	+0.9
148,379	+		GFF5516	0.75	-0.2
148,379	+		GFF5516	0.75	-0.2
148,379	+		GFF5516	0.75	+0.2
148,379	+		GFF5516	0.75	-0.2
148,379	+		GFF5516	0.75	+0.3
148,379	+		GFF5516	0.75	+0.7
148,379	+		GFF5516	0.75	-0.5
148,379	+		GFF5516	0.75	+2.9
148,379	+		GFF5516	0.75	-0.2
148,379	+		GFF5516	0.75	+0.2
148,379	+		GFF5516	0.75	-0.0
148,379	+		GFF5516	0.75	-1.0
148,379	+		GFF5516	0.75	-0.4
148,379	+		GFF5516	0.75	-0.6
148,379	+		GFF5516	0.75	-0.3
148,380	-		GFF5516	0.75	-1.1
148,380	-		GFF5516	0.75	+1.2
148,380	-		GFF5516	0.75	+0.3
148,380	-		GFF5516	0.75	-0.4
148,380	-		GFF5516	0.75	+0.3
148,380	-		GFF5516	0.75	-0.3
148,380	-		GFF5516	0.75	+1.2
148,380	-		GFF5516	0.75	-0.3
148,380	-		GFF5516	0.75	-0.6
148,380	-		GFF5516	0.75	-0.2
148,380	-		GFF5516	0.75	-0.2
148,380	-		GFF5516	0.75	-0.1
148,380	-		GFF5516	0.75	-1.2
148,424	+		GFF5516	0.78	-0.3
148,424	+		GFF5516	0.78	-0.2
148,424	+		GFF5516	0.78	+0.6
148,424	+		GFF5516	0.78	-1.5
148,424	+		GFF5516	0.78	+0.0
148,424	+		GFF5516	0.78	+0.6
148,424	+		GFF5516	0.78	+1.0
148,425	-		GFF5516	0.78	-0.2
148,425	-		GFF5516	0.78	+0.2
148,425	-		GFF5516	0.78	-0.5
148,425	-		GFF5516	0.78	-0.4
148,445	+		GFF5516	0.79	-0.2
148,445	+		GFF5516	0.79	-0.9
148,445	+		GFF5516	0.79	-0.6
148,445	+		GFF5516	0.79	-0.6
148,445	+		GFF5516	0.79	+0.3
148,445	+		GFF5516	0.79	-0.9
148,445	+		GFF5516	0.79	-1.3
148,445	+		GFF5516	0.79	-0.4
148,445	+		GFF5516	0.79	-0.4
148,445	+		GFF5516	0.79	-1.6
148,445	+		GFF5516	0.79	-0.1
148,446	-		GFF5516	0.80	+0.3
148,446	-		GFF5516	0.80	-0.8
148,446	-		GFF5516	0.80	-1.3
148,475	+		GFF5516	0.82	+1.4
148,475	+		GFF5516	0.82	-0.8
148,475	+		GFF5516	0.82	+0.6
148,475	+		GFF5516	0.82	+1.3
148,475	+		GFF5516	0.82	-0.6
148,475	+		GFF5516	0.82	+2.2
148,475	+		GFF5516	0.82	+0.3
148,475	+		GFF5516	0.82	+1.3
148,475	+		GFF5516	0.82	-1.3
148,475	+		GFF5516	0.82	-0.3
148,475	+		GFF5516	0.82	-1.0
148,475	+		GFF5516	0.82	+0.3
148,475	+		GFF5516	0.82	+1.3
148,475	+		GFF5516	0.82	+0.5
148,475	+		GFF5516	0.82	-0.1
148,475	+		GFF5516	0.82	+0.3
148,475	+		GFF5516	0.82	+0.3
148,475	+		GFF5516	0.82	-0.3
148,475	+		GFF5516	0.82	-0.5
148,475	+		GFF5516	0.82	+0.1
148,475	+		GFF5516	0.82	-0.5
148,475	+		GFF5516	0.82	+0.7
148,476	-		GFF5516	0.82	+0.7
148,476	-		GFF5516	0.82	-0.2
148,476	-		GFF5516	0.82	+1.5
148,476	-		GFF5516	0.82	+0.3
148,476	-		GFF5516	0.82	+0.4
148,476	-		GFF5516	0.82	-1.1
148,476	-		GFF5516	0.82	-0.4
148,476	-		GFF5516	0.82	+0.1
148,476	-		GFF5516	0.82	-0.0
148,476	-		GFF5516	0.82	-0.9
148,476	-		GFF5516	0.82	-0.1
148,476	-		GFF5516	0.82	-0.4
148,476	-		GFF5516	0.82	+0.3
148,476	-		GFF5516	0.82	-0.5
148,476	-		GFF5516	0.82	+0.5
148,476	-		GFF5516	0.82	-1.4
148,476	-		GFF5516	0.82	+0.0
148,476	-		GFF5516	0.82	-0.9
148,476	-		GFF5516	0.82	-0.6
148,476	-		GFF5516	0.82	-0.4
148,476	-		GFF5516	0.82	-1.5
148,476	-		GFF5516	0.82	+0.0
148,476	-		GFF5516	0.82	+0.1
148,476	-		GFF5516	0.82	+0.0
148,750	-				+0.6
148,750	-				-1.0
148,764	-				+0.7
148,960	+		GFF5517	0.31	+0.8
149,031	+		GFF5517	0.43	-0.1
149,031	+		GFF5517	0.43	-1.6
149,031	+		GFF5517	0.43	+0.5
149,031	+		GFF5517	0.43	+0.3
149,031	+		GFF5517	0.43	+0.6
149,031	+		GFF5517	0.43	-0.1
149,031	+		GFF5517	0.43	+1.1
149,031	+		GFF5517	0.43	+0.6
149,031	+		GFF5517	0.43	-0.3
149,031	+		GFF5517	0.43	+0.3
149,031	+		GFF5517	0.43	-0.5
149,031	+		GFF5517	0.43	+0.5
149,032	-		GFF5517	0.43	-0.4
149,032	-		GFF5517	0.43	+0.3
149,032	-		GFF5517	0.43	+0.6
149,032	-		GFF5517	0.43	+0.8
149,032	-		GFF5517	0.43	+1.1
149,073	+		GFF5517	0.50	-0.3
149,073	+		GFF5517	0.50	+1.1
149,073	+		GFF5517	0.50	+1.6
149,074	-		GFF5517	0.50	-0.1
149,074	-		GFF5517	0.50	-0.1
149,074	-		GFF5517	0.50	+0.2
149,074	-		GFF5517	0.50	-0.0
149,151	+		GFF5517	0.63	-0.1
149,151	+		GFF5517	0.63	-0.9
149,151	+		GFF5517	0.63	+1.0
149,151	+		GFF5517	0.63	+0.1
149,151	+		GFF5517	0.63	-0.9
149,152	-		GFF5517	0.64	-0.6
149,152	-		GFF5517	0.64	-0.4
149,152	-		GFF5517	0.64	-0.0
149,152	-		GFF5517	0.64	-0.1
149,152	-		GFF5517	0.64	-0.0
149,408	+				+0.4
149,408	+				-0.6
149,408	+				-0.0
149,408	+				-0.4
149,409	-				-1.0
149,409	-				-0.9
149,409	-				-1.1
149,409	-				-0.8
149,409	-				-0.6
149,445	+				-0.1
149,445	+				+0.0
149,445	+				-0.4
149,445	+				-0.3
149,445	+				-0.2
149,445	+				+0.1
149,445	+				-0.6
149,445	+				-0.2
149,445	+				-0.2
149,446	-				-0.4
149,446	-				-1.4
149,446	-				-0.3
149,589	+		GFF5518	0.31	-0.6
149,589	+		GFF5518	0.31	-0.8
149,590	-		GFF5518	0.31	+1.2
149,590	-		GFF5518	0.31	-1.3
149,590	-		GFF5518	0.31	-0.5
149,676	+		GFF5518	0.46	+0.3
149,677	-		GFF5518	0.46	+0.2
149,835	+		GFF5518	0.72	+0.3
149,835	+		GFF5518	0.72	-1.2
149,835	+		GFF5518	0.72	+0.8
149,835	+		GFF5518	0.72	-0.1
149,835	+		GFF5518	0.72	-0.3
149,835	+		GFF5518	0.72	-0.0
149,835	+		GFF5518	0.72	-0.7
149,835	+		GFF5518	0.72	+1.5
149,835	+		GFF5518	0.72	-0.5
149,836	-		GFF5518	0.73	+0.2
149,836	-		GFF5518	0.73	-0.4
149,836	-		GFF5518	0.73	-0.0
149,836	-		GFF5518	0.73	+0.3
149,836	-		GFF5518	0.73	+0.6
149,836	-		GFF5518	0.73	-0.4
149,836	-		GFF5518	0.73	-0.4
149,836	-		GFF5518	0.73	-1.6
149,868	+		GFF5518	0.78	+0.3
149,868	+		GFF5518	0.78	-1.3
149,868	+		GFF5518	0.78	+0.1
149,868	+		GFF5518	0.78	-0.7
149,868	+		GFF5518	0.78	+0.4
149,868	+		GFF5518	0.78	+0.2
149,868	+		GFF5518	0.78	-0.2
149,868	+		GFF5518	0.78	+0.0
149,868	+		GFF5518	0.78	+0.2
149,868	+		GFF5518	0.78	+0.2
149,868	+		GFF5518	0.78	-0.4
149,868	+		GFF5518	0.78	-0.3
149,869	-		GFF5518	0.78	-0.8
149,869	-		GFF5518	0.78	+0.1
149,869	-		GFF5518	0.78	+1.9
149,869	-		GFF5518	0.78	-0.1
149,869	-		GFF5518	0.78	-0.6
149,869	-		GFF5518	0.78	-0.3
149,869	-		GFF5518	0.78	+0.1
149,940	+				-0.0
149,940	+				-1.1
149,940	+				-1.3
149,940	+				+1.3
149,940	+				+0.6
149,940	+				-1.4
149,940	+				+0.3
149,940	+				-0.3
149,940	+				-2.3
149,941	-				-0.5
149,941	-				-0.2
149,941	-				+0.5
149,941	-				+1.5
149,941	-				+0.4
149,941	-				-0.7
149,941	-				-0.5
150,011	+				+1.0
150,011	+				+0.6
150,011	+				+0.1
150,011	+				+1.1
150,011	+				+1.1
150,011	+				+0.3
150,012	-				-0.1
150,012	-				-0.2
150,012	-				-0.6
150,012	-				-0.9
150,012	-				+0.7
150,012	-				-0.3
150,012	-				+0.9
150,068	-				+0.0