Strain Fitness in Variovorax sp. SCN45 around GFF5478

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
107,224	+				-0.1
107,224	+				-1.0
107,224	+				-0.7
107,224	+				-0.1
107,224	+				-0.4
107,224	+				-0.4
107,224	-				-0.2
107,225	-				-0.7
107,225	-				-0.6
107,225	-				+0.5
107,225	-				-0.3
107,225	-				-0.1
107,225	-				+0.1
107,225	-				-0.4
107,225	-				+0.5
107,225	-				-0.3
107,225	-				-0.8
107,225	-				+0.1
107,236	+				+0.8
107,236	+				+2.2
107,236	+				+0.0
107,236	+				-0.2
107,236	+				-0.3
107,236	+				-0.9
107,236	+				+0.2
107,236	+				-1.0
107,237	-				-1.0
107,237	-				-0.3
107,237	-				+0.6
107,237	-				-0.2
107,237	-				-0.5
107,237	-				-0.0
107,237	-				+0.1
107,383	+		GFF5477	0.26	+0.3
107,384	-		GFF5477	0.26	-0.2
107,620	+		GFF5477	0.57	+0.1
107,620	+		GFF5477	0.57	-1.0
107,620	+		GFF5477	0.57	+0.1
107,620	+		GFF5477	0.57	-0.2
107,620	+		GFF5477	0.57	-0.7
107,621	-		GFF5477	0.57	-0.5
107,621	-		GFF5477	0.57	-0.5
107,621	-		GFF5477	0.57	-0.4
107,638	+		GFF5477	0.59	+0.7
107,638	+		GFF5477	0.59	+1.2
107,638	+		GFF5477	0.59	-0.1
107,638	+		GFF5477	0.59	+2.6
107,638	+		GFF5477	0.59	+1.9
107,638	+		GFF5477	0.59	-0.9
107,638	+		GFF5477	0.59	-0.2
107,638	+		GFF5477	0.59	-1.0
107,638	+		GFF5477	0.59	+0.1
107,639	-		GFF5477	0.59	+1.3
107,639	-		GFF5477	0.59	-0.3
107,639	-		GFF5477	0.59	+1.9
107,639	-		GFF5477	0.59	+0.2
107,639	-		GFF5477	0.59	+0.1
107,639	-		GFF5477	0.59	+1.9
107,639	-		GFF5477	0.59	-0.6
107,639	-		GFF5477	0.59	-1.4
107,639	-		GFF5477	0.59	-0.4
107,839	+		GFF5477	0.85	+0.9
107,839	+		GFF5477	0.85	+0.4
107,839	+		GFF5477	0.85	+0.1
107,839	+		GFF5477	0.85	-0.3
107,839	+		GFF5477	0.85	-0.3
107,840	-		GFF5477	0.85	+0.8
107,840	-		GFF5477	0.85	+0.2
107,840	-		GFF5477	0.85	+0.1
107,840	-		GFF5477	0.85	-0.3
107,840	-		GFF5477	0.85	+0.3
107,840	-		GFF5477	0.85	-0.7
107,840	-		GFF5477	0.85	+0.4
107,840	-		GFF5477	0.85	+0.3
107,840	-		GFF5477	0.85	-0.1
107,840	-		GFF5477	0.85	+0.1
107,840	-		GFF5477	0.85	-0.9
107,840	-		GFF5477	0.85	-0.5
107,840	-		GFF5477	0.85	+1.0
107,840	-		GFF5477	0.85	-0.1
107,840	-		GFF5477	0.85	-0.0
107,997	+				+0.2
107,997	+				+0.0
107,997	+				-0.8
107,997	+				+0.2
107,997	+				-1.1
107,997	+				+1.6
107,997	+				-0.1
107,997	+				+0.9
107,997	+				-1.0
107,997	+				+0.6
107,997	+				+0.2
107,997	+				+0.0
107,997	+				+0.3
107,998	-				-0.7
107,998	-				-0.2
107,998	-				-0.1
107,998	-				+0.3
107,998	-				+0.1
107,998	-				+1.1
107,998	-				-0.4
107,998	-				-0.3
107,998	-				-0.4
108,127	+				-1.2
108,127	+				-0.4
108,127	+				-0.1
108,127	+				-0.3
108,127	+				-0.2
108,127	+				+0.2
108,127	+				+0.5
108,127	+				-1.7
108,127	+				+0.2
108,128	-				-0.2
108,128	-				+0.0
108,136	+				+0.4
108,136	+				-0.7
108,136	+				-0.2
108,136	+				+0.5
108,136	+				+2.5
108,136	+				-0.3
108,136	+				-0.3
108,136	+				+0.5
108,136	+				-0.5
108,136	+				+0.3
108,136	+				-1.3
108,136	+				+0.3
108,136	+				-0.1
108,136	+				-1.1
108,136	+				-0.4
108,136	+				+0.2
108,136	+				+0.9
108,136	+				-0.7
108,137	-				+0.3
108,137	-				+0.7
108,137	-				-0.2
108,137	-				-0.4
108,137	-				-0.1
108,137	-				-1.2
108,137	-				-0.6
108,137	-				-0.7
108,137	-				+0.1
108,137	-				-0.5
108,137	-				+0.1
108,137	-				-0.0
108,137	-				-0.0
108,137	-				+0.1
108,137	-				-0.4
108,137	-				+0.3
108,137	-				-0.2
108,140	+				-1.9
108,140	+				+0.6
108,140	+				+1.9
108,140	+				-1.0
108,140	+				-1.1
108,140	+				-0.4
108,140	+				-0.2
108,140	+				-0.6
108,140	+				-1.5
108,140	+				-0.4
108,140	+				-0.7
108,141	-				-0.3
108,141	-				-0.4
108,141	-				-0.2
108,141	-				+0.1
108,141	-				-1.0
108,141	-				-0.5
108,141	-				-2.3
108,141	-				-0.3
108,141	-				-0.6
108,141	-				-1.5
108,141	-				+0.3
108,141	-				-0.9
108,141	-				-0.4
108,141	-				-1.1
108,146	+				-0.7
108,146	+				+0.3
108,146	+				-1.7
108,146	+				+0.9
108,146	+				-0.7
108,146	+				-0.0
108,147	-				+0.4
108,147	-				-1.3
108,180	+				+0.2
108,180	+				-0.7
108,180	+				-0.2
108,180	+				-0.7
108,180	+				+0.9
108,180	+				-1.0
108,180	+				-0.2
108,180	+				+1.6
108,180	+				+0.2
108,180	+				-0.2
108,180	+				-0.6
108,180	+				-0.3
108,180	+				+0.7
108,180	+				+0.6
108,180	+				-0.6
108,180	+				-0.1
108,180	+				-0.5
108,180	+				-0.7
108,180	+				-0.5
108,180	+				+0.8
108,180	+				-0.4
108,180	+				-0.2
108,180	+				+0.1
108,181	-				+0.1
108,181	-				+0.4
108,181	-				-1.4
108,181	-				-0.3
108,181	-				-1.7
108,181	-				+0.1
108,181	-				-0.6
108,181	-				-0.6
108,181	-				+0.2
108,181	-				+0.2
108,181	-				-0.6
108,181	-				+0.2
108,181	-				-0.3
108,181	-				-0.3
108,181	-				-0.5
108,181	-				+1.6
108,181	-				-0.1
108,181	-				-0.4
108,580	+		GFF5478	0.63	+0.3
108,580	+		GFF5478	0.63	-0.6
108,581	-		GFF5478	0.63	-0.7
108,581	-		GFF5478	0.63	+0.4
108,581	-		GFF5478	0.63	-1.4
108,581	-		GFF5478	0.63	-0.1
108,581	-		GFF5478	0.63	-0.3
108,581	-		GFF5478	0.63	-1.2
108,883	+				+0.0
108,883	+				-0.4
108,883	+				-0.4
108,883	+				+0.9
108,883	+				-0.1
108,883	+				-0.2
108,883	+				+0.3
108,883	+				-1.0
108,884	-				+0.5
108,884	-				+0.3
108,884	-				-0.5
108,884	-				+0.3
108,884	-				-0.7
109,066	+		GFF5479	0.35	+0.3
109,066	+		GFF5479	0.35	-0.1
109,066	+		GFF5479	0.35	+1.1
109,066	+		GFF5479	0.35	-0.4
109,067	-		GFF5479	0.36	-1.3
109,067	-		GFF5479	0.36	-0.1
109,067	-		GFF5479	0.36	+0.2
109,067	-		GFF5479	0.36	+1.1
109,067	-		GFF5479	0.36	-0.5
109,186	+		GFF5479	0.57	+0.0
109,187	-		GFF5479	0.58	+1.1
109,187	-		GFF5479	0.58	+1.3
109,187	-		GFF5479	0.58	+0.2
109,187	-		GFF5479	0.58	-0.8
109,187	-		GFF5479	0.58	-1.1
109,279	+		GFF5479	0.75	+0.5
109,279	+		GFF5479	0.75	-0.3
109,279	+		GFF5479	0.75	-1.3
109,279	+		GFF5479	0.75	-0.6
109,279	+		GFF5479	0.75	+0.9
109,279	+		GFF5479	0.75	-0.1
109,279	+		GFF5479	0.75	-0.0
109,279	+		GFF5479	0.75	-1.4
109,280	-		GFF5479	0.75	-0.4
109,280	-		GFF5479	0.75	+0.2
109,280	-		GFF5479	0.75	-0.3
109,280	-		GFF5479	0.75	+0.5
109,280	-		GFF5479	0.75	+0.0
109,755	+		GFF5480	0.83	-0.2
109,755	+		GFF5480	0.83	-0.7
109,755	+		GFF5480	0.83	+0.5
109,755	+		GFF5480	0.83	-0.2
109,755	+		GFF5480	0.83	-1.0
109,755	+		GFF5480	0.83	-0.1
109,755	+		GFF5480	0.83	-1.1
109,755	+		GFF5480	0.83	-0.5
109,756	-		GFF5480	0.83	+0.2
109,756	-		GFF5480	0.83	+0.9
109,756	-		GFF5480	0.83	-0.3
109,756	-		GFF5480	0.83	-1.9
109,756	-		GFF5480	0.83	-0.3
109,756	-		GFF5480	0.83	+0.7
109,756	-		GFF5480	0.83	+0.3
109,756	-		GFF5480	0.83	-0.3
109,756	-		GFF5480	0.83	-0.0
109,756	-		GFF5480	0.83	-0.8
109,756	-		GFF5480	0.83	-0.2
109,756	-		GFF5480	0.83	+0.9
109,756	-		GFF5480	0.83	-0.3