Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5473 and GFF5474 are separated by 4 nucleotides GFF5474 and GFF5475 are separated by 53 nucleotides
GFF5473 - hypothetical protein, at 101,940 to 104,396
GFF5473
GFF5474 - no description, at 104,401 to 104,607
GFF5474
GFF5475 - Uncharacterized MFS-type transporter, at 104,661 to 106,286
GFF5475
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1
2
3 at 103.446 kb on + strand, within GFF5473 at 103.777 kb on + strand, within GFF5473 at 103.778 kb on - strand, within GFF5473 at 103.778 kb on - strand, within GFF5473 at 103.919 kb on + strand, within GFF5473 at 103.919 kb on + strand, within GFF5473 at 103.960 kb on + strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.210 kb on + strand at 104.210 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.534 kb on + strand, within GFF5474 at 104.534 kb on + strand, within GFF5474 at 104.534 kb on + strand, within GFF5474 at 104.535 kb on - strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.677 kb on + strand at 104.677 kb on + strand at 104.678 kb on - strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.813 kb on - strand at 104.813 kb on - strand at 104.814 kb on - strand at 105.184 kb on + strand, within GFF5475 at 105.184 kb on + strand, within GFF5475 at 105.184 kb on + strand, within GFF5475 at 105.185 kb on - strand, within GFF5475 at 105.185 kb on - strand, within GFF5475
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 103,446 + GFF5473 0.61 -0.3 103,777 + GFF5473 0.75 +0.1 103,778 - GFF5473 0.75 -0.6 103,778 - GFF5473 0.75 -0.0 103,919 + GFF5473 0.81 -0.2 103,919 + GFF5473 0.81 -0.6 103,960 + GFF5473 0.82 -0.2 103,961 - GFF5473 0.82 +1.3 103,961 - GFF5473 0.82 -0.2 103,961 - GFF5473 0.82 +0.2 103,961 - GFF5473 0.82 -0.9 103,961 - GFF5473 0.82 -0.3 103,961 - GFF5473 0.82 -0.9 104,015 + GFF5473 0.84 +0.7 104,015 + GFF5473 0.84 -0.6 104,015 + GFF5473 0.84 -0.0 104,015 + GFF5473 0.84 +0.2 104,016 - GFF5473 0.84 -0.4 104,016 - GFF5473 0.84 -0.3 104,016 - GFF5473 0.84 -0.3 104,016 - GFF5473 0.84 -0.2 104,016 - GFF5473 0.84 +1.2 104,210 + +1.5 104,210 + +0.3 104,417 + -0.6 104,417 + -1.3 104,417 + -0.3 104,417 + +0.2 104,418 - -0.8 104,418 - -0.2 104,418 - -0.7 104,418 - -0.3 104,418 - -0.9 104,534 + GFF5474 0.64 +0.0 104,534 + GFF5474 0.64 +0.0 104,534 + GFF5474 0.64 -0.5 104,535 - GFF5474 0.65 -0.2 104,560 + GFF5474 0.77 +0.9 104,560 + GFF5474 0.77 -0.4 104,560 + GFF5474 0.77 +0.4 104,560 + GFF5474 0.77 +0.2 104,677 + +0.2 104,677 + -1.3 104,678 - +0.1 104,812 + -1.6 104,812 + +0.2 104,812 + -0.6 104,812 + +1.2 104,812 + +0.1 104,813 - +0.9 104,813 - +0.5 104,814 - +0.3 105,184 + GFF5475 0.32 +0.0 105,184 + GFF5475 0.32 +1.6 105,184 + GFF5475 0.32 -0.7 105,185 - GFF5475 0.32 +3.2 105,185 - GFF5475 0.32 -0.9
Or see this region's nucleotide sequence