Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5460 and GFF5461 are separated by 12 nucleotides GFF5461 and GFF5462 overlap by 4 nucleotides GFF5462 and GFF5463 overlap by 4 nucleotides GFF5463 and GFF5464 overlap by 8 nucleotides
GFF5460 - 3-oxo-tetronate 4-phosphate decarboxylase, at 91,087 to 91,752
GFF5460
GFF5461 - 2-dehydrotetronate isomerase (EC 5.3.1.35), at 91,765 to 92,583
GFF5461
GFF5462 - Cytosine deaminase (EC 3.5.4.1), at 92,580 to 93,776
GFF5462
GFF5463 - RidA/YER057c/UK114 superfamily protein, at 93,773 to 94,240
GFF5463
GFF5464 - Transcriptional regulator, AcrR family, at 94,233 to 94,919
GFF5464
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 91.753 kb on + strand at 91.753 kb on + strand at 91.754 kb on - strand at 91.754 kb on - strand at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.876 kb on + strand, within GFF5461 at 92.128 kb on + strand, within GFF5461 at 92.128 kb on + strand, within GFF5461 at 92.128 kb on + strand, within GFF5461 at 92.128 kb on + strand, within GFF5461 at 92.129 kb on - strand, within GFF5461 at 92.129 kb on - strand, within GFF5461 at 92.129 kb on - strand, within GFF5461 at 92.183 kb on + strand, within GFF5461 at 92.184 kb on - strand, within GFF5461 at 92.184 kb on - strand, within GFF5461 at 92.302 kb on + strand, within GFF5461 at 92.302 kb on + strand, within GFF5461 at 92.302 kb on + strand, within GFF5461 at 92.303 kb on - strand, within GFF5461 at 92.303 kb on - strand, within GFF5461 at 92.303 kb on - strand, within GFF5461 at 92.339 kb on - strand, within GFF5461 at 92.350 kb on + strand, within GFF5461 at 92.350 kb on + strand, within GFF5461 at 92.351 kb on - strand, within GFF5461 at 92.351 kb on - strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.431 kb on + strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.432 kb on - strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.437 kb on + strand, within GFF5461 at 92.438 kb on - strand, within GFF5461 at 92.438 kb on - strand, within GFF5461 at 92.503 kb on + strand at 92.503 kb on + strand at 92.737 kb on + strand, within GFF5462 at 92.737 kb on + strand, within GFF5462 at 92.737 kb on + strand, within GFF5462 at 92.738 kb on - strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.766 kb on + strand, within GFF5462 at 92.767 kb on - strand, within GFF5462 at 92.767 kb on - strand, within GFF5462 at 92.767 kb on - strand, within GFF5462 at 92.767 kb on - strand, within GFF5462 at 93.118 kb on - strand, within GFF5462 at 93.397 kb on - strand, within GFF5462 at 93.397 kb on - strand, within GFF5462 at 93.397 kb on - strand, within GFF5462 at 93.513 kb on + strand, within GFF5462 at 93.513 kb on + strand, within GFF5462 at 93.513 kb on + strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.514 kb on - strand, within GFF5462 at 93.519 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.528 kb on + strand, within GFF5462 at 93.529 kb on - strand, within GFF5462 at 93.682 kb on + strand at 93.682 kb on + strand at 93.683 kb on - strand at 93.683 kb on - strand at 93.683 kb on - strand at 93.800 kb on + strand at 93.800 kb on + strand at 93.800 kb on + strand at 93.800 kb on + strand at 93.800 kb on + strand at 93.801 kb on - strand at 93.801 kb on - strand at 93.801 kb on - strand at 93.801 kb on - strand at 93.801 kb on - strand at 93.888 kb on - strand, within GFF5463 at 94.070 kb on + strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.092 kb on - strand, within GFF5463 at 94.092 kb on - strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.125 kb on - strand, within GFF5463 at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.234 kb on + strand at 94.234 kb on + strand at 94.235 kb on - strand at 94.235 kb on - strand at 94.235 kb on - strand at 94.285 kb on + strand at 94.286 kb on - strand at 94.328 kb on - strand, within GFF5464 at 94.328 kb on - strand, within GFF5464 at 94.330 kb on + strand, within GFF5464 at 94.330 kb on + strand, within GFF5464 at 94.357 kb on + strand, within GFF5464 at 94.357 kb on + strand, within GFF5464 at 94.358 kb on - strand, within GFF5464 at 94.358 kb on - strand, within GFF5464 at 94.443 kb on + strand, within GFF5464 at 94.444 kb on - strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.703 kb on - strand, within GFF5464 at 94.703 kb on - strand, within GFF5464 at 94.703 kb on - strand, within GFF5464
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 91,753 + -1.6 91,753 + -0.7 91,754 - -2.7 91,754 - -0.7 91,864 + GFF5461 0.12 -0.3 91,864 + GFF5461 0.12 -0.1 91,864 + GFF5461 0.12 +0.5 91,864 + GFF5461 0.12 +0.3 91,865 - GFF5461 0.12 -0.1 91,865 - GFF5461 0.12 +0.2 91,865 - GFF5461 0.12 -0.1 91,876 + GFF5461 0.14 +0.2 92,128 + GFF5461 0.44 +0.3 92,128 + GFF5461 0.44 -1.9 92,128 + GFF5461 0.44 +0.4 92,128 + GFF5461 0.44 +0.2 92,129 - GFF5461 0.44 +0.3 92,129 - GFF5461 0.44 +0.3 92,129 - GFF5461 0.44 +2.9 92,183 + GFF5461 0.51 -0.3 92,184 - GFF5461 0.51 -0.1 92,184 - GFF5461 0.51 -0.1 92,302 + GFF5461 0.66 -0.2 92,302 + GFF5461 0.66 -0.2 92,302 + GFF5461 0.66 -1.1 92,303 - GFF5461 0.66 +0.9 92,303 - GFF5461 0.66 +1.1 92,303 - GFF5461 0.66 +0.4 92,339 - GFF5461 0.70 -1.8 92,350 + GFF5461 0.71 -0.5 92,350 + GFF5461 0.71 -0.3 92,351 - GFF5461 0.72 -1.2 92,351 - GFF5461 0.72 -1.2 92,431 + GFF5461 0.81 -0.4 92,431 + GFF5461 0.81 +0.1 92,431 + GFF5461 0.81 +0.7 92,431 + GFF5461 0.81 +0.2 92,431 + GFF5461 0.81 -0.7 92,431 + GFF5461 0.81 +0.9 92,431 + GFF5461 0.81 -0.3 92,431 + GFF5461 0.81 -0.9 92,432 - GFF5461 0.81 -0.7 92,432 - GFF5461 0.81 -0.0 92,432 - GFF5461 0.81 -0.7 92,432 - GFF5461 0.81 -1.3 92,432 - GFF5461 0.81 +0.0 92,432 - GFF5461 0.81 -0.1 92,432 - GFF5461 0.81 -0.8 92,437 + GFF5461 0.82 -0.9 92,437 + GFF5461 0.82 +0.3 92,437 + GFF5461 0.82 -0.7 92,437 + GFF5461 0.82 +0.1 92,437 + GFF5461 0.82 -0.1 92,437 + GFF5461 0.82 -1.0 92,438 - GFF5461 0.82 -0.2 92,438 - GFF5461 0.82 -0.7 92,503 + +0.1 92,503 + -0.5 92,737 + GFF5462 0.13 -0.0 92,737 + GFF5462 0.13 +0.1 92,737 + GFF5462 0.13 +1.5 92,738 - GFF5462 0.13 +0.9 92,766 + GFF5462 0.16 -0.1 92,766 + GFF5462 0.16 +0.3 92,766 + GFF5462 0.16 -0.8 92,766 + GFF5462 0.16 -0.0 92,766 + GFF5462 0.16 -0.6 92,766 + GFF5462 0.16 -0.2 92,766 + GFF5462 0.16 -0.3 92,766 + GFF5462 0.16 -0.6 92,766 + GFF5462 0.16 -2.2 92,767 - GFF5462 0.16 +0.9 92,767 - GFF5462 0.16 -0.3 92,767 - GFF5462 0.16 +0.3 92,767 - GFF5462 0.16 -0.1 93,118 - GFF5462 0.45 +0.3 93,397 - GFF5462 0.68 -1.2 93,397 - GFF5462 0.68 -0.8 93,397 - GFF5462 0.68 -0.8 93,513 + GFF5462 0.78 -0.2 93,513 + GFF5462 0.78 +1.2 93,513 + GFF5462 0.78 -0.1 93,514 - GFF5462 0.78 -0.2 93,514 - GFF5462 0.78 +1.9 93,514 - GFF5462 0.78 -0.5 93,514 - GFF5462 0.78 -1.6 93,514 - GFF5462 0.78 +2.3 93,514 - GFF5462 0.78 -1.0 93,514 - GFF5462 0.78 -0.4 93,514 - GFF5462 0.78 -1.0 93,514 - GFF5462 0.78 -0.4 93,514 - GFF5462 0.78 -0.0 93,519 + GFF5462 0.78 +0.3 93,528 + GFF5462 0.79 -0.1 93,528 + GFF5462 0.79 -1.3 93,528 + GFF5462 0.79 +0.5 93,528 + GFF5462 0.79 -0.4 93,528 + GFF5462 0.79 -0.3 93,528 + GFF5462 0.79 -1.1 93,528 + GFF5462 0.79 -0.3 93,528 + GFF5462 0.79 -1.1 93,528 + GFF5462 0.79 -0.7 93,529 - GFF5462 0.79 -0.3 93,682 + +1.9 93,682 + -0.9 93,683 - +1.2 93,683 - -1.7 93,683 - -0.7 93,800 + +0.3 93,800 + -0.7 93,800 + +0.3 93,800 + +0.7 93,800 + -0.3 93,801 - +0.5 93,801 - -0.4 93,801 - -0.4 93,801 - -0.2 93,801 - -0.6 93,888 - GFF5463 0.25 -1.8 94,070 + GFF5463 0.63 +2.9 94,071 - GFF5463 0.64 +0.2 94,071 - GFF5463 0.64 -0.6 94,071 - GFF5463 0.64 -0.1 94,071 - GFF5463 0.64 -0.7 94,071 - GFF5463 0.64 -0.3 94,092 - GFF5463 0.68 -0.5 94,092 - GFF5463 0.68 -0.2 94,100 + GFF5463 0.70 +0.9 94,100 + GFF5463 0.70 +0.3 94,100 + GFF5463 0.70 -0.4 94,100 + GFF5463 0.70 +0.8 94,100 + GFF5463 0.70 -0.2 94,100 + GFF5463 0.70 +0.3 94,100 + GFF5463 0.70 -0.3 94,101 - GFF5463 0.70 -0.5 94,101 - GFF5463 0.70 -0.7 94,101 - GFF5463 0.70 -0.4 94,101 - GFF5463 0.70 -0.1 94,101 - GFF5463 0.70 +0.0 94,101 - GFF5463 0.70 +1.1 94,101 - GFF5463 0.70 +0.1 94,125 - GFF5463 0.75 +0.9 94,214 + +0.6 94,214 + +0.1 94,214 + +0.9 94,214 + -0.9 94,214 + +0.0 94,214 + -0.2 94,214 + +0.1 94,214 + -0.0 94,214 + -1.3 94,214 + -0.2 94,214 + -0.6 94,214 + +1.2 94,215 - -0.5 94,215 - +0.2 94,215 - +0.9 94,215 - -0.3 94,215 - +0.6 94,215 - -0.2 94,215 - +0.4 94,215 - -0.9 94,215 - -0.6 94,215 - -0.3 94,215 - +0.2 94,215 - +1.4 94,234 + +0.0 94,234 + -0.2 94,235 - -0.6 94,235 - +0.1 94,235 - +0.0 94,285 + +1.5 94,286 - -0.3 94,328 - GFF5464 0.14 +0.6 94,328 - GFF5464 0.14 +0.4 94,330 + GFF5464 0.14 -0.5 94,330 + GFF5464 0.14 +1.6 94,357 + GFF5464 0.18 +0.4 94,357 + GFF5464 0.18 -0.3 94,358 - GFF5464 0.18 +0.2 94,358 - GFF5464 0.18 +0.6 94,443 + GFF5464 0.31 +1.0 94,444 - GFF5464 0.31 +0.0 94,699 + GFF5464 0.68 +0.9 94,699 + GFF5464 0.68 -0.6 94,699 + GFF5464 0.68 -0.7 94,699 + GFF5464 0.68 +0.9 94,699 + GFF5464 0.68 +0.2 94,699 + GFF5464 0.68 +0.4 94,699 + GFF5464 0.68 -0.4 94,700 - GFF5464 0.68 -0.2 94,700 - GFF5464 0.68 +0.4 94,700 - GFF5464 0.68 -0.6 94,700 - GFF5464 0.68 -0.1 94,702 + GFF5464 0.68 +0.3 94,702 + GFF5464 0.68 -2.1 94,702 + GFF5464 0.68 +0.0 94,702 + GFF5464 0.68 +1.2 94,702 + GFF5464 0.68 -1.2 94,703 - GFF5464 0.68 +0.2 94,703 - GFF5464 0.68 -0.2 94,703 - GFF5464 0.68 -1.1
Or see this region's nucleotide sequence