Strain Fitness in Variovorax sp. SCN45 around GFF5451

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
79,397	+		GFF5449	0.23	-0.9
79,397	+		GFF5449	0.23	-0.1
79,397	+		GFF5449	0.23	-0.1
79,398	-		GFF5449	0.23	-0.8
79,398	-		GFF5449	0.23	-0.4
79,398	-		GFF5449	0.23	-1.0
79,398	-		GFF5449	0.23	-0.0
79,398	-		GFF5449	0.23	-0.1
79,398	-		GFF5449	0.23	+0.9
79,398	-		GFF5449	0.23	-1.3
79,398	-		GFF5449	0.23	-0.1
79,700	+		GFF5449	0.69	+0.3
79,700	+		GFF5449	0.69	+0.1
79,700	+		GFF5449	0.69	-0.6
79,700	+		GFF5449	0.69	+0.2
79,700	+		GFF5449	0.69	-1.0
79,700	+		GFF5449	0.69	-0.1
79,700	+		GFF5449	0.69	-0.3
79,700	+		GFF5449	0.69	-0.7
79,701	-		GFF5449	0.69	-0.0
79,743	+		GFF5449	0.75	-0.7
79,743	+		GFF5449	0.75	-0.9
79,744	-		GFF5449	0.75	-0.3
79,744	-		GFF5449	0.75	+0.1
79,744	-		GFF5449	0.75	-0.2
79,821	+		GFF5449	0.87	-0.8
79,822	-		GFF5449	0.87	-1.1
79,892	-				-0.0
79,892	-				+0.1
79,892	-				-0.2
79,945	+				-0.2
79,945	+				-0.1
79,945	+				-1.9
79,945	+				-0.9
79,945	+				+0.9
79,945	+				+0.6
79,945	+				+0.9
79,945	+				-0.6
79,945	+				-0.7
79,945	+				-0.0
79,945	+				+1.9
79,945	+				+0.9
79,945	+				-0.3
79,945	+				-0.7
79,946	-				-0.6
79,946	-				-0.1
79,946	-				-1.2
79,946	-				+0.9
79,946	-				-0.3
79,946	-				-0.2
79,946	-				+1.4
79,946	-				+0.1
79,946	-				-0.4
79,946	-				+0.0
79,946	-				+0.2
79,946	-				+0.5
79,946	-				+0.1
79,968	+				-0.5
79,968	+				-0.0
79,969	-				+0.2
79,993	+				+0.4
80,045	-				-0.2
80,092	+				+0.2
80,092	+				-0.1
80,092	+				+0.0
80,092	+				-0.2
80,093	-				+0.3
80,093	-				-0.4
80,093	-				+0.0
80,093	-				-0.1
80,093	-				+0.1
80,281	+				-0.4
80,281	+				-0.6
80,281	+				-1.4
80,281	+				-0.3
80,281	+				+0.0
80,281	+				-1.4
80,281	+				+1.3
80,281	+				+0.6
80,281	+				+1.6
80,281	+				-0.6
80,282	-				-0.6
80,282	-				-0.5
80,282	-				-0.7
80,282	-				-1.1
80,282	-				-1.4
80,282	-				+0.0
80,595	+		GFF5451	0.29	-1.0
80,643	+		GFF5451	0.33	-0.4
80,643	+		GFF5451	0.33	+0.1
80,643	+		GFF5451	0.33	-0.7
80,643	+		GFF5451	0.33	-2.3
80,643	+		GFF5451	0.33	-0.7
80,643	+		GFF5451	0.33	+0.1
80,644	-		GFF5451	0.33	-0.4
80,644	-		GFF5451	0.33	-0.7
80,644	-		GFF5451	0.33	-0.5
80,644	-		GFF5451	0.33	-1.1
80,644	-		GFF5451	0.33	-1.2
80,644	-		GFF5451	0.33	+0.7
80,644	-		GFF5451	0.33	-0.6
80,646	+		GFF5451	0.33	+0.2
80,646	+		GFF5451	0.33	-0.4
80,646	+		GFF5451	0.33	-0.6
80,646	+		GFF5451	0.33	-0.8
80,646	+		GFF5451	0.33	+0.9
80,646	+		GFF5451	0.33	-0.3
80,646	+		GFF5451	0.33	-0.1
80,647	-		GFF5451	0.33	+0.3
80,647	-		GFF5451	0.33	-1.9
80,647	-		GFF5451	0.33	-0.7
80,647	-		GFF5451	0.33	-0.4
80,647	-		GFF5451	0.33	+0.3
80,647	-		GFF5451	0.33	-0.0
80,647	-		GFF5451	0.33	-0.4
80,647	-		GFF5451	0.33	-0.4
80,658	+		GFF5451	0.34	-2.2
80,658	+		GFF5451	0.34	-0.3
80,658	+		GFF5451	0.34	-0.5
80,658	+		GFF5451	0.34	+0.7
80,658	+		GFF5451	0.34	+0.5
80,658	+		GFF5451	0.34	-1.5
80,658	+		GFF5451	0.34	-0.6
80,658	+		GFF5451	0.34	+1.7
80,659	-		GFF5451	0.34	-2.3
80,659	-		GFF5451	0.34	-0.4
80,659	-		GFF5451	0.34	-0.8
80,659	-		GFF5451	0.34	+1.9
80,659	-		GFF5451	0.34	-0.6
80,659	-		GFF5451	0.34	-0.5
80,659	-		GFF5451	0.34	-0.6
80,703	+		GFF5451	0.38	+1.3
80,703	+		GFF5451	0.38	-0.2
80,703	+		GFF5451	0.38	-0.7
80,704	-		GFF5451	0.38	-0.8
80,704	-		GFF5451	0.38	-0.9
80,704	-		GFF5451	0.38	-0.5
80,704	-		GFF5451	0.38	-1.0
80,704	-		GFF5451	0.38	+0.0
80,704	-		GFF5451	0.38	-0.9
80,742	+		GFF5451	0.42	-0.5
80,742	+		GFF5451	0.42	-1.2
80,742	+		GFF5451	0.42	-1.0
80,743	-		GFF5451	0.42	-0.4
80,887	-		GFF5451	0.55	-1.1
80,934	+		GFF5451	0.59	+0.6
80,935	-		GFF5451	0.59	-1.1
81,063	+		GFF5451	0.71	-0.3
81,063	+		GFF5451	0.71	-2.4
81,063	+		GFF5451	0.71	-0.6
81,063	+		GFF5451	0.71	-0.5
81,064	-		GFF5451	0.71	-2.1
81,064	-		GFF5451	0.71	-1.4
81,064	-		GFF5451	0.71	-0.8
81,064	-		GFF5451	0.71	+0.3
81,064	-		GFF5451	0.71	-0.1
81,064	-		GFF5451	0.71	+0.7
81,064	-		GFF5451	0.71	+0.6
81,064	-		GFF5451	0.71	-0.3
81,064	-		GFF5451	0.71	+0.3
81,064	-		GFF5451	0.71	+0.3
81,156	-		GFF5451	0.79	-0.2
81,183	+		GFF5451	0.81	+1.9
81,291	+				-0.0
81,291	+				+0.2
81,291	+				+0.9
81,291	+				-1.9
81,292	-				-0.3
81,292	-				+0.5
81,292	-				+0.1
81,292	-				+0.3
81,292	-				-1.4
81,292	-				+0.5
81,468	+				-0.4
81,468	+				-0.4
81,468	+				+0.8
81,468	+				+0.5
81,469	-				-0.4
81,469	-				+0.0
81,469	-				-1.3
81,469	-				-0.6
81,469	-				-0.4
81,469	-				+0.3
81,469	-				+0.4
81,469	-				-0.5
81,469	-				+0.5
81,469	-				+0.1
81,469	-				-0.5
81,479	+		GFF5452	0.11	-0.2
81,479	+		GFF5452	0.11	-0.5
81,479	+		GFF5452	0.11	-0.8
81,479	+		GFF5452	0.11	-0.8
81,480	-		GFF5452	0.12	-1.4
81,480	-		GFF5452	0.12	-0.6
81,480	-		GFF5452	0.12	-0.0
81,480	-		GFF5452	0.12	-0.4
81,480	-		GFF5452	0.12	+0.0
81,855	+		GFF5453	0.12	+0.2
81,855	+		GFF5453	0.12	+0.1
81,855	+		GFF5453	0.12	+0.3
81,855	+		GFF5453	0.12	-0.4
81,855	+		GFF5453	0.12	+0.5
81,855	+		GFF5453	0.12	+0.9
81,855	+		GFF5453	0.12	-0.3
81,855	+		GFF5453	0.12	+1.1
81,855	+		GFF5453	0.12	-0.3
81,856	-		GFF5453	0.12	-0.3
81,856	-		GFF5453	0.12	-0.7
81,856	-		GFF5453	0.12	+0.2
81,867	+		GFF5453	0.12	-0.2
81,867	+		GFF5453	0.12	-0.4
81,867	+		GFF5453	0.12	-0.7
81,868	-		GFF5453	0.13	+0.9
81,868	-		GFF5453	0.13	+0.1
81,868	-		GFF5453	0.13	-0.2
81,868	-		GFF5453	0.13	+0.5
81,936	+		GFF5453	0.16	+0.3
81,936	+		GFF5453	0.16	+0.6
81,936	+		GFF5453	0.16	-0.2
81,937	-		GFF5453	0.16	+1.0
81,937	-		GFF5453	0.16	-0.1
81,939	+		GFF5453	0.16	-1.1
81,939	+		GFF5453	0.16	-0.9
81,939	+		GFF5453	0.16	-0.7
81,939	+		GFF5453	0.16	+1.1
81,939	+		GFF5453	0.16	-0.3
81,939	+		GFF5453	0.16	-1.1
81,939	+		GFF5453	0.16	+1.3
81,940	-		GFF5453	0.16	-1.3
81,940	-		GFF5453	0.16	+0.3
81,940	-		GFF5453	0.16	+0.0
81,940	-		GFF5453	0.16	+0.8
81,940	-		GFF5453	0.16	-0.5
81,940	-		GFF5453	0.16	+0.6
81,940	-		GFF5453	0.16	+0.1
81,940	-		GFF5453	0.16	+0.2
81,940	-		GFF5453	0.16	+1.1
81,940	-		GFF5453	0.16	+0.3
81,940	-		GFF5453	0.16	-0.6
82,098	+		GFF5453	0.24	+0.7
82,098	+		GFF5453	0.24	-0.5
82,098	+		GFF5453	0.24	-0.6
82,099	-		GFF5453	0.24	+0.0
82,099	-		GFF5453	0.24	-1.3
82,099	-		GFF5453	0.24	-0.2
82,099	-		GFF5453	0.24	-0.1
82,131	+		GFF5453	0.26	+1.2
82,131	+		GFF5453	0.26	-0.2
82,131	+		GFF5453	0.26	-0.0
82,131	+		GFF5453	0.26	-0.7
82,132	-		GFF5453	0.26	+1.7
82,132	-		GFF5453	0.26	-0.4
82,132	-		GFF5453	0.26	-0.4
82,132	-		GFF5453	0.26	-0.9
82,132	-		GFF5453	0.26	-1.0
82,132	-		GFF5453	0.26	-0.6
82,209	+		GFF5453	0.30	+0.6
82,209	+		GFF5453	0.30	-0.6
82,209	+		GFF5453	0.30	-0.4
82,209	+		GFF5453	0.30	-0.3
82,210	-		GFF5453	0.30	-0.4
82,210	-		GFF5453	0.30	+0.0
82,210	-		GFF5453	0.30	+0.4
82,210	-		GFF5453	0.30	+1.2
82,210	-		GFF5453	0.30	-1.1
82,210	-		GFF5453	0.30	+0.3
82,210	-		GFF5453	0.30	+0.2
82,210	-		GFF5453	0.30	-3.1
82,210	-		GFF5453	0.30	+0.8
82,210	-		GFF5453	0.30	-1.1
82,210	-		GFF5453	0.30	-0.2
82,302	+		GFF5453	0.34	-1.2
82,303	-		GFF5453	0.34	-0.2
82,303	-		GFF5453	0.34	-1.1
82,350	+		GFF5453	0.37	+1.9
82,350	+		GFF5453	0.37	+1.1
82,350	+		GFF5453	0.37	-0.3
82,350	+		GFF5453	0.37	-0.1
82,350	+		GFF5453	0.37	-2.0
82,351	-		GFF5453	0.37	+0.6
82,351	-		GFF5453	0.37	-0.3
82,351	-		GFF5453	0.37	-0.4
82,351	-		GFF5453	0.37	+0.3
82,351	-		GFF5453	0.37	-0.7
82,351	-		GFF5453	0.37	+0.0
82,351	-		GFF5453	0.37	-0.3
82,351	-		GFF5453	0.37	-0.6
82,352	+		GFF5453	0.37	+0.1
82,352	+		GFF5453	0.37	+0.1
82,352	+		GFF5453	0.37	+0.2
82,352	+		GFF5453	0.37	+1.0
82,353	-		GFF5453	0.37	+0.8
82,353	-		GFF5453	0.37	-0.1
82,353	-		GFF5453	0.37	-0.4
82,353	-		GFF5453	0.37	-1.6
82,353	-		GFF5453	0.37	-0.8
82,353	-		GFF5453	0.37	-0.6