Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5430 and GFF5431 are separated by 132 nucleotides GFF5431 and GFF5432 are separated by 131 nucleotides GFF5432 and GFF5433 are separated by 117 nucleotides
GFF5430 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 54,410 to 55,522
GFF5430
GFF5431 - Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2), at 55,655 to 57,034
GFF5431
GFF5432 - Glutathione S-transferase family protein, at 57,166 to 57,777
GFF5432
GFF5433 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 57,895 to 58,689
GFF5433
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 54.660 kb on - strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.215 kb on + strand, within GFF5430 at 55.215 kb on + strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.241 kb on + strand, within GFF5430 at 55.396 kb on - strand, within GFF5430 at 55.396 kb on - strand, within GFF5430 at 55.548 kb on + strand at 55.548 kb on + strand at 55.638 kb on + strand at 55.638 kb on + strand at 55.639 kb on - strand at 55.639 kb on - strand at 55.644 kb on + strand at 55.645 kb on - strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 57.118 kb on + strand at 57.118 kb on + strand at 57.119 kb on - strand at 57.127 kb on + strand at 57.127 kb on + strand at 57.127 kb on + strand at 57.127 kb on + strand at 57.128 kb on - strand at 57.128 kb on - strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.130 kb on + strand at 57.131 kb on - strand at 57.131 kb on - strand at 57.131 kb on - strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.145 kb on + strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.146 kb on - strand at 57.150 kb on + strand at 57.150 kb on + strand at 57.151 kb on - strand at 57.151 kb on - strand at 57.195 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.196 kb on + strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.197 kb on - strand at 57.241 kb on + strand, within GFF5432 at 57.241 kb on + strand, within GFF5432 at 57.241 kb on + strand, within GFF5432 at 57.242 kb on - strand, within GFF5432 at 57.242 kb on - strand, within GFF5432 at 57.242 kb on - strand, within GFF5432 at 57.370 kb on + strand, within GFF5432 at 57.370 kb on + strand, within GFF5432 at 57.370 kb on + strand, within GFF5432 at 57.370 kb on + strand, within GFF5432 at 57.371 kb on - strand, within GFF5432 at 57.371 kb on - strand, within GFF5432 at 57.479 kb on + strand, within GFF5432 at 57.479 kb on + strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.480 kb on - strand, within GFF5432 at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.730 kb on + strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.731 kb on - strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.761 kb on + strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.762 kb on - strand at 57.890 kb on + strand at 57.891 kb on - strand at 57.891 kb on - strand at 57.891 kb on - strand at 57.891 kb on - strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.929 kb on + strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.930 kb on - strand at 57.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,660 - GFF5430 0.22 -1.1 54,747 + GFF5430 0.30 -0.3 54,747 + GFF5430 0.30 -2.3 54,747 + GFF5430 0.30 -0.1 54,748 - GFF5430 0.30 -0.6 54,748 - GFF5430 0.30 -0.2 54,748 - GFF5430 0.30 -0.1 54,748 - GFF5430 0.30 +0.0 54,748 - GFF5430 0.30 -0.3 54,748 - GFF5430 0.30 -0.5 54,748 - GFF5430 0.30 -1.5 54,748 - GFF5430 0.30 -0.7 54,748 - GFF5430 0.30 -0.4 54,748 - GFF5430 0.30 -0.2 54,909 + GFF5430 0.45 -0.9 54,909 + GFF5430 0.45 +0.0 54,909 + GFF5430 0.45 +0.1 54,909 + GFF5430 0.45 -1.3 54,909 + GFF5430 0.45 -0.5 54,909 + GFF5430 0.45 -0.7 54,909 + GFF5430 0.45 -0.7 54,909 + GFF5430 0.45 -0.3 54,909 + GFF5430 0.45 -0.8 54,909 + GFF5430 0.45 +0.6 54,909 + GFF5430 0.45 +0.1 54,909 + GFF5430 0.45 +0.4 54,910 - GFF5430 0.45 -1.0 54,910 - GFF5430 0.45 -0.1 54,910 - GFF5430 0.45 -0.2 54,910 - GFF5430 0.45 +0.6 54,910 - GFF5430 0.45 +0.1 54,910 - GFF5430 0.45 -0.2 54,910 - GFF5430 0.45 +0.9 54,910 - GFF5430 0.45 -0.4 54,910 - GFF5430 0.45 -0.4 54,910 - GFF5430 0.45 -0.8 54,910 - GFF5430 0.45 -0.4 54,910 - GFF5430 0.45 -0.1 54,910 - GFF5430 0.45 -1.7 55,077 + GFF5430 0.60 -0.3 55,077 + GFF5430 0.60 -0.9 55,077 + GFF5430 0.60 -0.1 55,077 + GFF5430 0.60 -0.3 55,077 + GFF5430 0.60 +0.5 55,077 + GFF5430 0.60 -0.8 55,077 + GFF5430 0.60 -0.0 55,077 + GFF5430 0.60 -1.1 55,077 + GFF5430 0.60 +0.2 55,078 - GFF5430 0.60 -0.3 55,078 - GFF5430 0.60 -0.2 55,078 - GFF5430 0.60 -0.5 55,078 - GFF5430 0.60 +0.0 55,078 - GFF5430 0.60 +0.6 55,078 - GFF5430 0.60 +1.2 55,078 - GFF5430 0.60 +0.2 55,078 - GFF5430 0.60 +0.8 55,158 + GFF5430 0.67 +0.3 55,158 + GFF5430 0.67 -0.3 55,158 + GFF5430 0.67 -2.2 55,158 + GFF5430 0.67 +0.3 55,158 + GFF5430 0.67 -0.2 55,158 + GFF5430 0.67 +1.0 55,158 + GFF5430 0.67 -0.8 55,158 + GFF5430 0.67 -0.8 55,158 + GFF5430 0.67 -0.6 55,158 + GFF5430 0.67 -0.5 55,158 + GFF5430 0.67 -0.1 55,158 + GFF5430 0.67 -0.7 55,158 + GFF5430 0.67 -0.3 55,158 + GFF5430 0.67 +0.0 55,158 + GFF5430 0.67 +0.1 55,159 - GFF5430 0.67 -0.8 55,159 - GFF5430 0.67 -0.2 55,159 - GFF5430 0.67 +0.2 55,159 - GFF5430 0.67 +0.5 55,159 - GFF5430 0.67 -0.1 55,159 - GFF5430 0.67 -0.1 55,215 + GFF5430 0.72 -0.3 55,215 + GFF5430 0.72 -0.1 55,216 - GFF5430 0.72 -0.2 55,216 - GFF5430 0.72 -0.2 55,216 - GFF5430 0.72 -2.1 55,216 - GFF5430 0.72 -1.2 55,216 - GFF5430 0.72 -0.5 55,241 + GFF5430 0.75 +0.2 55,396 - GFF5430 0.89 -0.4 55,396 - GFF5430 0.89 +0.5 55,548 + -0.0 55,548 + -0.4 55,638 + -0.2 55,638 + -0.1 55,639 - +1.5 55,639 - -0.0 55,644 + -0.4 55,645 - -0.3 55,656 + -1.4 55,656 + -0.8 55,656 + +0.9 55,656 + +0.6 55,656 + -0.2 55,656 + -0.6 55,656 + -1.0 55,656 + +0.0 55,657 - -0.2 55,657 - +0.9 55,657 - +0.0 55,657 - +0.3 55,657 - -0.9 55,657 - +1.3 57,118 + +0.2 57,118 + +0.0 57,119 - +0.4 57,127 + -0.6 57,127 + +0.3 57,127 + +0.3 57,127 + +0.5 57,128 - -0.3 57,128 - -1.2 57,130 + +0.9 57,130 + +0.6 57,130 + -0.2 57,130 + +0.8 57,130 + -0.1 57,130 + +1.2 57,130 + +0.3 57,131 - +0.4 57,131 - -0.4 57,131 - +0.3 57,145 + +0.5 57,145 + -0.2 57,145 + -0.6 57,145 + -0.6 57,145 + -0.5 57,145 + -0.7 57,145 + +0.1 57,146 - -0.4 57,146 - +0.3 57,146 - -0.7 57,146 - -0.4 57,146 - -0.0 57,146 - -0.4 57,146 - +1.3 57,146 - -0.0 57,146 - -0.4 57,146 - +0.7 57,146 - -2.0 57,150 + +0.2 57,150 + -0.1 57,151 - -0.5 57,151 - -1.6 57,195 + -0.4 57,196 + +0.1 57,196 + +0.3 57,196 + -2.3 57,196 + -0.6 57,196 + +0.2 57,196 + -0.5 57,196 + +0.7 57,196 + -0.1 57,196 + -0.1 57,196 + +0.8 57,196 + -0.1 57,197 - -0.3 57,197 - -1.3 57,197 - -0.6 57,197 - -0.1 57,197 - -0.3 57,197 - -0.3 57,197 - -0.9 57,197 - -0.1 57,197 - -1.1 57,197 - -0.2 57,241 + GFF5432 0.12 +0.9 57,241 + GFF5432 0.12 -3.1 57,241 + GFF5432 0.12 +1.2 57,242 - GFF5432 0.12 -0.1 57,242 - GFF5432 0.12 -0.5 57,242 - GFF5432 0.12 +0.3 57,370 + GFF5432 0.33 -0.2 57,370 + GFF5432 0.33 -1.2 57,370 + GFF5432 0.33 -0.5 57,370 + GFF5432 0.33 -0.8 57,371 - GFF5432 0.33 -0.3 57,371 - GFF5432 0.33 -1.8 57,479 + GFF5432 0.51 -0.7 57,479 + GFF5432 0.51 -1.3 57,480 - GFF5432 0.51 -0.6 57,480 - GFF5432 0.51 +0.3 57,480 - GFF5432 0.51 -0.1 57,480 - GFF5432 0.51 +1.3 57,480 - GFF5432 0.51 -0.5 57,480 - GFF5432 0.51 -1.4 57,730 + -0.5 57,730 + -0.3 57,730 + -1.1 57,730 + -1.1 57,730 + -0.1 57,730 + -0.8 57,730 + -0.3 57,730 + -0.1 57,730 + +0.0 57,730 + -1.1 57,730 + -0.4 57,730 + -1.0 57,730 + -1.2 57,730 + -1.3 57,730 + -1.2 57,731 - -0.7 57,731 - -1.6 57,731 - -0.1 57,731 - +0.5 57,731 - -0.8 57,731 - -0.4 57,731 - -0.7 57,731 - +0.2 57,731 - -0.0 57,731 - +1.3 57,731 - -0.4 57,731 - +0.0 57,761 + +0.9 57,761 + +0.6 57,761 + -0.4 57,761 + -1.1 57,761 + -1.3 57,761 + -0.5 57,761 + -2.0 57,761 + -0.2 57,761 + +0.2 57,761 + -0.5 57,761 + -0.0 57,761 + -0.7 57,761 + -0.4 57,761 + -1.7 57,761 + -1.0 57,761 + -1.0 57,762 - -0.2 57,762 - -0.9 57,762 - -1.2 57,762 - -2.1 57,762 - -0.6 57,762 - -0.6 57,762 - -0.3 57,762 - -0.9 57,762 - -0.3 57,762 - -0.2 57,762 - +0.5 57,762 - -0.2 57,762 - -0.7 57,762 - +1.5 57,762 - -0.3 57,762 - -0.6 57,762 - -1.5 57,762 - -0.9 57,890 + -0.8 57,891 - -0.5 57,891 - +0.3 57,891 - -0.5 57,891 - -0.6 57,929 + -0.8 57,929 + -0.6 57,929 + -0.7 57,929 + -0.8 57,929 + -0.1 57,929 + -0.7 57,929 + -0.9 57,929 + -0.9 57,929 + -1.3 57,930 - -0.3 57,930 - -0.7 57,930 - +0.9 57,930 - +0.4 57,930 - -0.4 57,930 - +1.2 57,930 - +0.5 57,930 - -0.4 57,930 - -1.0 57,930 - -0.5 57,930 - -1.9 57,930 - -0.5 57,938 + +0.1
Or see this region's nucleotide sequence