Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5209 and GFF5210 are separated by 80 nucleotides GFF5210 and GFF5211 overlap by 4 nucleotides GFF5211 and GFF5212 are separated by 32 nucleotides
GFF5209 - DUF1854 domain-containing protein, at 71,758 to 72,240
GFF5209
GFF5210 - hypothetical protein, at 72,321 to 73,031
GFF5210
GFF5211 - Alkaline phosphatase (EC 3.1.3.1), at 73,028 to 74,566
GFF5211
GFF5212 - Alkaline phosphatase (EC 3.1.3.1), at 74,599 to 76,062
GFF5212
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.341 kb on - strand at 72.356 kb on - strand at 72.356 kb on - strand at 72.463 kb on + strand, within GFF5210 at 72.520 kb on + strand, within GFF5210 at 73.344 kb on + strand, within GFF5211 at 73.344 kb on + strand, within GFF5211 at 73.344 kb on + strand, within GFF5211 at 73.386 kb on + strand, within GFF5211 at 73.386 kb on + strand, within GFF5211 at 73.387 kb on - strand, within GFF5211 at 73.387 kb on - strand, within GFF5211 at 73.512 kb on + strand, within GFF5211 at 73.722 kb on + strand, within GFF5211 at 73.809 kb on + strand, within GFF5211 at 73.810 kb on - strand, within GFF5211 at 73.894 kb on - strand, within GFF5211 at 73.951 kb on - strand, within GFF5211 at 73.992 kb on + strand, within GFF5211 at 74.020 kb on - strand, within GFF5211 at 74.160 kb on + strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.241 kb on + strand, within GFF5211 at 74.762 kb on + strand, within GFF5212 at 74.762 kb on + strand, within GFF5212 at 74.762 kb on + strand, within GFF5212 at 74.763 kb on - strand, within GFF5212 at 74.847 kb on - strand, within GFF5212 at 74.891 kb on + strand, within GFF5212 at 74.891 kb on + strand, within GFF5212 at 75.242 kb on + strand, within GFF5212 at 75.242 kb on + strand, within GFF5212 at 75.329 kb on + strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.335 kb on + strand, within GFF5212 at 75.410 kb on + strand, within GFF5212
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 72,341 - -2.2 72,356 - -0.8 72,356 - +0.4 72,463 + GFF5210 0.20 +0.1 72,520 + GFF5210 0.28 +0.2 73,344 + GFF5211 0.21 -0.4 73,344 + GFF5211 0.21 +0.5 73,344 + GFF5211 0.21 -1.6 73,386 + GFF5211 0.23 +0.3 73,386 + GFF5211 0.23 +2.4 73,387 - GFF5211 0.23 -0.9 73,387 - GFF5211 0.23 -1.2 73,512 + GFF5211 0.31 +1.8 73,722 + GFF5211 0.45 -1.6 73,809 + GFF5211 0.51 -0.6 73,810 - GFF5211 0.51 +1.2 73,894 - GFF5211 0.56 -0.0 73,951 - GFF5211 0.60 -1.6 73,992 + GFF5211 0.63 +0.2 74,020 - GFF5211 0.64 -1.1 74,160 + GFF5211 0.74 -0.0 74,161 - GFF5211 0.74 -0.7 74,161 - GFF5211 0.74 +1.2 74,161 - GFF5211 0.74 -0.1 74,241 + GFF5211 0.79 +0.8 74,762 + GFF5212 0.11 +0.5 74,762 + GFF5212 0.11 +0.1 74,762 + GFF5212 0.11 -0.4 74,763 - GFF5212 0.11 +0.0 74,847 - GFF5212 0.17 +0.2 74,891 + GFF5212 0.20 +1.4 74,891 + GFF5212 0.20 -0.3 75,242 + GFF5212 0.44 +0.7 75,242 + GFF5212 0.44 +0.5 75,329 + GFF5212 0.50 -0.1 75,330 - GFF5212 0.50 -0.8 75,330 - GFF5212 0.50 -0.5 75,335 + GFF5212 0.50 -0.5 75,410 + GFF5212 0.55 +0.4
Or see this region's nucleotide sequence