Strain Fitness in Variovorax sp. SCN45 around GFF5154

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5152 and GFF5153 are separated by 34 nucleotidesGFF5153 and GFF5154 overlap by 28 nucleotidesGFF5154 and GFF5155 are separated by 155 nucleotidesGFF5155 and GFF5156 are separated by 25 nucleotides GFF5152 - Uncharacterized membrane-anchored protein Rmet_0180, at 5,043 to 5,237 GFF5152 GFF5153 - Putative ROK-family transcriptional regulator, at 5,272 to 6,198 GFF5153 GFF5154 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 6,171 to 7,712 GFF5154 GFF5155 - hypothetical protein, at 7,868 to 8,206 GFF5155 GFF5156 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 8,232 to 9,617 GFF5156 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.235 kb on + strandat 5.235 kb on + strandat 5.236 kb on - strandat 5.285 kb on + strandat 5.286 kb on - strandat 5.286 kb on - strandat 5.286 kb on - strandat 5.707 kb on + strand, within GFF5153at 5.707 kb on + strand, within GFF5153at 5.708 kb on - strand, within GFF5153at 5.708 kb on - strand, within GFF5153at 5.848 kb on + strand, within GFF5153at 5.848 kb on + strand, within GFF5153at 5.848 kb on + strand, within GFF5153at 5.848 kb on + strand, within GFF5153at 5.849 kb on - strand, within GFF5153at 5.849 kb on - strand, within GFF5153at 5.858 kb on + strand, within GFF5153at 5.859 kb on - strand, within GFF5153at 5.859 kb on - strand, within GFF5153at 5.859 kb on - strand, within GFF5153at 5.859 kb on - strand, within GFF5153at 5.859 kb on - strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.998 kb on + strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 5.999 kb on - strand, within GFF5153at 6.172 kb on + strandat 6.173 kb on - strandat 6.173 kb on - strandat 6.173 kb on - strandat 6.311 kb on - strandat 6.337 kb on + strand, within GFF5154at 6.337 kb on + strand, within GFF5154at 6.337 kb on + strand, within GFF5154at 6.337 kb on + strand, within GFF5154at 6.337 kb on + strand, within GFF5154at 6.338 kb on - strand, within GFF5154at 6.338 kb on - strand, within GFF5154at 6.489 kb on - strand, within GFF5154at 6.503 kb on - strand, within GFF5154at 6.578 kb on - strand, within GFF5154at 6.578 kb on - strand, within GFF5154at 6.578 kb on - strand, within GFF5154at 6.578 kb on - strand, within GFF5154at 6.578 kb on - strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.646 kb on + strand, within GFF5154at 6.647 kb on - strand, within GFF5154at 6.647 kb on - strand, within GFF5154at 6.647 kb on - strand, within GFF5154at 6.647 kb on - strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.739 kb on + strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.740 kb on - strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.811 kb on + strand, within GFF5154at 6.812 kb on - strand, within GFF5154at 6.812 kb on - strand, within GFF5154at 6.812 kb on - strand, within GFF5154at 6.812 kb on - strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.946 kb on + strand, within GFF5154at 6.947 kb on - strand, within GFF5154at 6.947 kb on - strand, within GFF5154at 6.947 kb on - strand, within GFF5154at 6.947 kb on - strand, within GFF5154at 7.005 kb on + strand, within GFF5154at 7.005 kb on + strand, within GFF5154at 7.006 kb on - strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.054 kb on + strand, within GFF5154at 7.055 kb on - strand, within GFF5154at 7.055 kb on - strand, within GFF5154at 7.055 kb on - strand, within GFF5154at 7.055 kb on - strand, within GFF5154at 7.306 kb on + strand, within GFF5154at 7.307 kb on - strand, within GFF5154at 7.307 kb on - strand, within GFF5154at 7.486 kb on + strand, within GFF5154at 7.487 kb on - strand, within GFF5154at 7.487 kb on - strand, within GFF5154at 7.487 kb on - strand, within GFF5154at 7.645 kb on + strandat 7.645 kb on + strandat 7.646 kb on - strandat 7.646 kb on - strandat 7.646 kb on - strandat 7.646 kb on - strandat 7.646 kb on - strandat 7.646 kb on - strandat 7.667 kb on - strandat 7.694 kb on + strandat 7.695 kb on - strandat 7.748 kb on + strandat 7.749 kb on - strandat 7.775 kb on + strandat 7.775 kb on + strandat 7.775 kb on + strandat 7.775 kb on + strandat 7.776 kb on - strandat 7.786 kb on + strandat 7.786 kb on + strandat 7.786 kb on + strandat 7.787 kb on - strandat 7.787 kb on - strandat 7.787 kb on - strandat 7.787 kb on - strandat 7.787 kb on - strandat 7.787 kb on - strandat 7.787 kb on - strandat 8.398 kb on + strand, within GFF5156at 8.398 kb on + strand, within GFF5156at 8.399 kb on - strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.497 kb on + strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.498 kb on - strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.605 kb on + strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.606 kb on - strand, within GFF5156at 8.635 kb on + strand, within GFF5156at 8.689 kb on + strand, within GFF5156at 8.689 kb on + strand, within GFF5156at 8.690 kb on - strand, within GFF5156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
5,235 + +0.3
5,235 + -0.2
5,236 - -0.5
5,285 + -1.1
5,286 - +0.0
5,286 - -0.6
5,286 - -0.0
5,707 + GFF5153 0.47 +0.5
5,707 + GFF5153 0.47 +0.7
5,708 - GFF5153 0.47 -0.7
5,708 - GFF5153 0.47 +0.3
5,848 + GFF5153 0.62 -0.8
5,848 + GFF5153 0.62 -0.1
5,848 + GFF5153 0.62 +0.4
5,848 + GFF5153 0.62 -0.2
5,849 - GFF5153 0.62 +0.1
5,849 - GFF5153 0.62 -0.5
5,858 + GFF5153 0.63 -0.4
5,859 - GFF5153 0.63 -0.8
5,859 - GFF5153 0.63 +0.3
5,859 - GFF5153 0.63 -0.7
5,859 - GFF5153 0.63 -0.6
5,859 - GFF5153 0.63 -0.4
5,998 + GFF5153 0.78 -0.4
5,998 + GFF5153 0.78 -0.5
5,998 + GFF5153 0.78 +0.6
5,998 + GFF5153 0.78 -0.0
5,998 + GFF5153 0.78 -0.8
5,998 + GFF5153 0.78 -0.0
5,998 + GFF5153 0.78 -0.2
5,998 + GFF5153 0.78 -0.2
5,998 + GFF5153 0.78 -1.8
5,998 + GFF5153 0.78 -1.9
5,998 + GFF5153 0.78 -0.6
5,998 + GFF5153 0.78 -1.2
5,998 + GFF5153 0.78 +0.2
5,998 + GFF5153 0.78 +0.0
5,999 - GFF5153 0.78 -0.0
5,999 - GFF5153 0.78 -0.6
5,999 - GFF5153 0.78 -0.8
5,999 - GFF5153 0.78 +0.4
5,999 - GFF5153 0.78 -0.1
5,999 - GFF5153 0.78 -0.9
5,999 - GFF5153 0.78 -2.9
6,172 + -0.8
6,173 - -0.9
6,173 - -0.5
6,173 - -3.1
6,311 - -0.2
6,337 + GFF5154 0.11 +0.7
6,337 + GFF5154 0.11 -0.6
6,337 + GFF5154 0.11 +0.1
6,337 + GFF5154 0.11 +0.3
6,337 + GFF5154 0.11 -0.8
6,338 - GFF5154 0.11 -2.7
6,338 - GFF5154 0.11 -0.7
6,489 - GFF5154 0.21 -1.0
6,503 - GFF5154 0.22 -0.3
6,578 - GFF5154 0.26 -0.4
6,578 - GFF5154 0.26 -0.0
6,578 - GFF5154 0.26 -0.7
6,578 - GFF5154 0.26 -0.8
6,578 - GFF5154 0.26 -1.8
6,646 + GFF5154 0.31 -0.3
6,646 + GFF5154 0.31 +0.1
6,646 + GFF5154 0.31 -0.3
6,646 + GFF5154 0.31 -0.1
6,646 + GFF5154 0.31 -1.3
6,646 + GFF5154 0.31 +0.8
6,647 - GFF5154 0.31 -0.7
6,647 - GFF5154 0.31 +1.4
6,647 - GFF5154 0.31 -1.3
6,647 - GFF5154 0.31 -0.5
6,739 + GFF5154 0.37 +0.3
6,739 + GFF5154 0.37 +1.4
6,739 + GFF5154 0.37 +0.3
6,739 + GFF5154 0.37 -0.8
6,739 + GFF5154 0.37 +0.5
6,739 + GFF5154 0.37 +0.3
6,739 + GFF5154 0.37 +1.1
6,740 - GFF5154 0.37 -2.3
6,740 - GFF5154 0.37 -0.0
6,740 - GFF5154 0.37 +1.1
6,740 - GFF5154 0.37 +0.2
6,740 - GFF5154 0.37 -1.9
6,740 - GFF5154 0.37 -1.4
6,811 + GFF5154 0.42 -0.1
6,811 + GFF5154 0.42 -0.3
6,811 + GFF5154 0.42 +2.4
6,811 + GFF5154 0.42 -0.3
6,811 + GFF5154 0.42 -1.1
6,811 + GFF5154 0.42 -0.4
6,812 - GFF5154 0.42 +0.4
6,812 - GFF5154 0.42 -0.5
6,812 - GFF5154 0.42 -0.1
6,812 - GFF5154 0.42 -0.8
6,946 + GFF5154 0.50 -0.3
6,946 + GFF5154 0.50 -0.3
6,946 + GFF5154 0.50 +0.1
6,946 + GFF5154 0.50 +1.8
6,946 + GFF5154 0.50 -0.2
6,946 + GFF5154 0.50 -0.4
6,946 + GFF5154 0.50 -0.8
6,946 + GFF5154 0.50 +0.3
6,947 - GFF5154 0.50 -0.5
6,947 - GFF5154 0.50 -1.0
6,947 - GFF5154 0.50 -1.7
6,947 - GFF5154 0.50 -2.0
7,005 + GFF5154 0.54 -0.1
7,005 + GFF5154 0.54 -0.4
7,006 - GFF5154 0.54 +0.4
7,054 + GFF5154 0.57 -0.5
7,054 + GFF5154 0.57 +1.0
7,054 + GFF5154 0.57 -0.5
7,054 + GFF5154 0.57 -0.2
7,054 + GFF5154 0.57 -0.6
7,054 + GFF5154 0.57 -0.2
7,054 + GFF5154 0.57 -0.6
7,054 + GFF5154 0.57 -0.5
7,055 - GFF5154 0.57 -1.4
7,055 - GFF5154 0.57 +0.6
7,055 - GFF5154 0.57 +0.5
7,055 - GFF5154 0.57 -0.6
7,306 + GFF5154 0.74 -0.5
7,307 - GFF5154 0.74 -0.4
7,307 - GFF5154 0.74 -1.7
7,486 + GFF5154 0.85 -0.7
7,487 - GFF5154 0.85 -0.0
7,487 - GFF5154 0.85 -1.5
7,487 - GFF5154 0.85 -0.7
7,645 + -0.1
7,645 + +0.7
7,646 - +0.0
7,646 - -1.6
7,646 - +0.1
7,646 - +1.2
7,646 - -0.1
7,646 - -0.3
7,667 - -0.8
7,694 + -0.5
7,695 - -1.5
7,748 + -0.4
7,749 - -0.5
7,775 + -0.8
7,775 + -0.5
7,775 + -0.9
7,775 + -0.4
7,776 - -0.0
7,786 + -0.8
7,786 + +0.5
7,786 + -0.5
7,787 - -0.2
7,787 - -0.5
7,787 - -2.2
7,787 - -0.1
7,787 - +0.9
7,787 - +0.4
7,787 - +0.6
8,398 + GFF5156 0.12 -0.3
8,398 + GFF5156 0.12 +0.8
8,399 - GFF5156 0.12 +0.2
8,497 + GFF5156 0.19 -1.0
8,497 + GFF5156 0.19 +0.9
8,497 + GFF5156 0.19 -0.9
8,497 + GFF5156 0.19 +0.0
8,497 + GFF5156 0.19 +0.3
8,497 + GFF5156 0.19 -0.4
8,498 - GFF5156 0.19 -0.5
8,498 - GFF5156 0.19 -0.6
8,498 - GFF5156 0.19 -1.3
8,498 - GFF5156 0.19 +0.9
8,498 - GFF5156 0.19 +0.4
8,498 - GFF5156 0.19 -1.0
8,498 - GFF5156 0.19 -2.1
8,498 - GFF5156 0.19 -0.5
8,498 - GFF5156 0.19 -1.8
8,498 - GFF5156 0.19 -0.3
8,498 - GFF5156 0.19 +0.4
8,498 - GFF5156 0.19 -0.2
8,498 - GFF5156 0.19 -0.6
8,498 - GFF5156 0.19 -1.8
8,605 + GFF5156 0.27 -0.6
8,605 + GFF5156 0.27 -0.2
8,605 + GFF5156 0.27 +0.3
8,605 + GFF5156 0.27 -0.4
8,605 + GFF5156 0.27 -0.2
8,605 + GFF5156 0.27 -1.9
8,605 + GFF5156 0.27 +0.1
8,605 + GFF5156 0.27 +0.8
8,605 + GFF5156 0.27 -0.3
8,605 + GFF5156 0.27 +1.1
8,606 - GFF5156 0.27 -1.8
8,606 - GFF5156 0.27 -1.0
8,606 - GFF5156 0.27 -0.0
8,606 - GFF5156 0.27 +0.2
8,606 - GFF5156 0.27 -0.2
8,606 - GFF5156 0.27 -0.4
8,606 - GFF5156 0.27 -1.5
8,606 - GFF5156 0.27 -1.2
8,606 - GFF5156 0.27 -0.2
8,635 + GFF5156 0.29 -0.4
8,689 + GFF5156 0.33 -0.0
8,689 + GFF5156 0.33 -0.1
8,690 - GFF5156 0.33 +0.1

Or see this region's nucleotide sequence