Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5083 and GFF5084 are separated by 7 nucleotides GFF5084 and GFF5085 are separated by 184 nucleotides GFF5085 and GFF5086 are separated by 62 nucleotides
GFF5083 - Transcriptional regulator, LysR family, at 186,886 to 187,833
GFF5083
GFF5084 - FIG00933367: hypothetical protein, at 187,841 to 188,278
GFF5084
GFF5085 - hypothetical protein, at 188,463 to 188,918
GFF5085
GFF5086 - Glycine betaine transporter OpuD, at 188,981 to 190,495
GFF5086
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 187.830 kb on + strand at 187.831 kb on + strand at 187.831 kb on + strand at 187.831 kb on + strand at 187.831 kb on + strand at 187.831 kb on + strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.832 kb on - strand at 187.941 kb on + strand, within GFF5084 at 187.942 kb on - strand, within GFF5084 at 187.942 kb on - strand, within GFF5084 at 187.942 kb on - strand, within GFF5084 at 187.942 kb on - strand, within GFF5084 at 187.968 kb on + strand, within GFF5084 at 187.968 kb on + strand, within GFF5084 at 187.969 kb on - strand, within GFF5084 at 187.969 kb on - strand, within GFF5084 at 188.091 kb on + strand, within GFF5084 at 188.091 kb on + strand, within GFF5084 at 188.092 kb on - strand, within GFF5084 at 188.092 kb on - strand, within GFF5084 at 188.092 kb on - strand, within GFF5084 at 188.343 kb on + strand at 188.378 kb on + strand at 188.378 kb on + strand at 188.462 kb on + strand at 188.462 kb on + strand at 188.462 kb on + strand at 188.462 kb on + strand at 188.462 kb on + strand at 188.463 kb on - strand at 188.541 kb on + strand, within GFF5085 at 188.541 kb on + strand, within GFF5085 at 188.541 kb on + strand, within GFF5085 at 188.541 kb on + strand, within GFF5085 at 188.541 kb on + strand, within GFF5085 at 188.542 kb on - strand, within GFF5085 at 188.542 kb on - strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.592 kb on + strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.593 kb on - strand, within GFF5085 at 188.640 kb on + strand, within GFF5085 at 188.641 kb on - strand, within GFF5085 at 188.667 kb on + strand, within GFF5085 at 188.835 kb on + strand, within GFF5085 at 188.835 kb on + strand, within GFF5085 at 188.835 kb on + strand, within GFF5085 at 188.836 kb on - strand, within GFF5085 at 188.925 kb on + strand at 188.926 kb on - strand at 188.926 kb on - strand at 188.926 kb on - strand at 189.131 kb on + strand at 189.131 kb on + strand at 189.131 kb on + strand at 189.131 kb on + strand at 189.131 kb on + strand at 189.132 kb on - strand at 189.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 187,830 + -1.3 187,831 + +0.5 187,831 + +0.0 187,831 + +0.2 187,831 + -2.3 187,831 + -1.2 187,832 - -1.6 187,832 - +0.8 187,832 - -0.3 187,832 - -0.1 187,832 - -2.0 187,832 - -1.0 187,832 - +0.1 187,832 - -0.4 187,832 - +0.6 187,941 + GFF5084 0.23 -0.2 187,942 - GFF5084 0.23 -1.1 187,942 - GFF5084 0.23 +0.8 187,942 - GFF5084 0.23 -0.6 187,942 - GFF5084 0.23 -0.0 187,968 + GFF5084 0.29 -0.5 187,968 + GFF5084 0.29 +0.2 187,969 - GFF5084 0.29 -1.8 187,969 - GFF5084 0.29 +0.0 188,091 + GFF5084 0.57 -1.7 188,091 + GFF5084 0.57 -1.3 188,092 - GFF5084 0.57 -0.4 188,092 - GFF5084 0.57 -0.2 188,092 - GFF5084 0.57 -0.7 188,343 + +0.0 188,378 + -0.7 188,378 + -0.2 188,462 + +1.3 188,462 + -0.7 188,462 + -1.2 188,462 + +0.5 188,462 + +0.9 188,463 - -0.1 188,541 + GFF5085 0.17 -1.3 188,541 + GFF5085 0.17 -1.2 188,541 + GFF5085 0.17 +0.2 188,541 + GFF5085 0.17 -0.4 188,541 + GFF5085 0.17 -0.3 188,542 - GFF5085 0.17 -0.2 188,542 - GFF5085 0.17 +1.4 188,592 + GFF5085 0.28 -1.6 188,592 + GFF5085 0.28 -1.6 188,592 + GFF5085 0.28 -0.4 188,592 + GFF5085 0.28 +0.8 188,592 + GFF5085 0.28 -0.6 188,592 + GFF5085 0.28 -1.0 188,592 + GFF5085 0.28 -0.6 188,592 + GFF5085 0.28 +0.8 188,592 + GFF5085 0.28 -0.3 188,592 + GFF5085 0.28 -0.4 188,592 + GFF5085 0.28 -0.6 188,593 - GFF5085 0.29 -1.2 188,593 - GFF5085 0.29 -1.0 188,593 - GFF5085 0.29 -0.0 188,593 - GFF5085 0.29 -0.1 188,593 - GFF5085 0.29 -1.3 188,593 - GFF5085 0.29 +0.3 188,640 + GFF5085 0.39 -1.1 188,641 - GFF5085 0.39 -0.1 188,667 + GFF5085 0.45 -3.2 188,835 + GFF5085 0.82 -0.2 188,835 + GFF5085 0.82 -1.1 188,835 + GFF5085 0.82 +0.5 188,836 - GFF5085 0.82 -0.4 188,925 + -0.2 188,926 - -0.8 188,926 - -0.7 188,926 - -0.1 189,131 + +0.7 189,131 + -1.1 189,131 + +0.8 189,131 + -1.5 189,131 + +0.4 189,132 - -0.8 189,132 - -2.3
Or see this region's nucleotide sequence