Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5046 and GFF5047 are separated by 28 nucleotides GFF5047 and GFF5048 are separated by 22 nucleotides GFF5048 and GFF5049 are separated by 90 nucleotides GFF5049 and GFF5050 overlap by 4 nucleotides
GFF5046 - putative lipoprotein, at 147,943 to 148,656
GFF5046
GFF5047 - hypothetical protein, at 148,685 to 148,906
GFF5047
GFF5048 - no description, at 148,929 to 149,945
GFF5048
GFF5049 - NAD-dependent protein deacetylase of SIR2 family, at 150,036 to 150,785
GFF5049
GFF5050 - Transcriptional regulator, IclR family, at 150,782 to 151,642
GFF5050
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.023 kb on - strand, within GFF5046 at 148.087 kb on + strand, within GFF5046 at 148.088 kb on - strand, within GFF5046 at 148.423 kb on + strand, within GFF5046 at 148.423 kb on + strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.654 kb on + strand at 148.654 kb on + strand at 148.655 kb on - strand at 148.655 kb on - strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 149.021 kb on + strand at 149.021 kb on + strand at 149.021 kb on + strand at 149.021 kb on + strand at 149.022 kb on - strand at 149.022 kb on - strand at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.057 kb on - strand, within GFF5048 at 149.112 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.394 kb on - strand, within GFF5048 at 149.394 kb on - strand, within GFF5048 at 149.454 kb on + strand, within GFF5048 at 149.455 kb on - strand, within GFF5048 at 149.455 kb on - strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.701 kb on + strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.851 kb on + strand at 149.852 kb on - strand at 149.852 kb on - strand at 149.891 kb on + strand at 149.891 kb on + strand at 149.892 kb on - strand at 149.892 kb on - strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.917 kb on - strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.959 kb on + strand at 149.959 kb on + strand at 149.959 kb on + strand at 149.960 kb on - strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.653 kb on - strand, within GFF5049 at 150.653 kb on - strand, within GFF5049 at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,022 + GFF5046 0.11 +0.2 148,022 + GFF5046 0.11 -0.5 148,022 + GFF5046 0.11 +1.8 148,022 + GFF5046 0.11 +0.4 148,022 + GFF5046 0.11 +0.2 148,022 + GFF5046 0.11 -0.1 148,023 - GFF5046 0.11 +1.1 148,087 + GFF5046 0.20 -0.5 148,088 - GFF5046 0.20 -0.7 148,423 + GFF5046 0.67 +0.0 148,423 + GFF5046 0.67 +0.6 148,424 - GFF5046 0.67 -1.0 148,424 - GFF5046 0.67 +0.4 148,424 - GFF5046 0.67 +0.7 148,654 + +0.1 148,654 + +0.8 148,655 - +0.5 148,655 - +0.1 148,679 + +1.8 148,679 + +0.1 148,679 + -0.0 148,679 + -0.5 148,679 + -0.7 148,679 + -0.7 148,679 + -1.9 148,679 + -0.0 148,679 + +0.2 148,679 + -1.2 148,679 + -0.4 148,679 + -1.3 148,679 + +1.8 148,679 + -0.6 148,680 - -0.4 148,680 - -1.3 148,680 - +0.7 148,680 - +0.8 148,680 - -0.1 148,680 - -0.6 148,680 - -0.0 148,680 - +0.1 148,680 - -0.2 148,680 - -0.9 148,680 - +0.4 148,680 - -0.2 148,680 - -0.8 148,680 - -1.2 148,680 - -0.0 148,680 - -1.2 148,863 + GFF5047 0.80 -0.6 148,863 + GFF5047 0.80 -0.9 148,863 + GFF5047 0.80 -0.7 148,863 + GFF5047 0.80 -0.4 148,863 + GFF5047 0.80 +0.1 148,863 + GFF5047 0.80 +0.0 148,863 + GFF5047 0.80 -0.6 148,864 - GFF5047 0.81 -0.4 148,864 - GFF5047 0.81 -0.7 148,864 - GFF5047 0.81 +2.3 148,864 - GFF5047 0.81 -0.6 149,021 + +0.3 149,021 + -0.5 149,021 + +1.0 149,021 + -0.1 149,022 - -1.7 149,022 - -0.0 149,041 + GFF5048 0.11 +0.9 149,041 + GFF5048 0.11 -0.4 149,041 + GFF5048 0.11 +1.3 149,041 + GFF5048 0.11 -0.4 149,041 + GFF5048 0.11 -0.4 149,041 + GFF5048 0.11 -1.3 149,041 + GFF5048 0.11 +1.2 149,041 + GFF5048 0.11 +0.2 149,042 - GFF5048 0.11 -0.6 149,042 - GFF5048 0.11 -0.9 149,042 - GFF5048 0.11 -0.4 149,042 - GFF5048 0.11 +0.0 149,042 - GFF5048 0.11 -1.3 149,042 - GFF5048 0.11 -0.1 149,057 - GFF5048 0.13 +0.1 149,112 + GFF5048 0.18 +0.3 149,152 + GFF5048 0.22 +0.4 149,152 + GFF5048 0.22 -0.4 149,152 + GFF5048 0.22 -0.5 149,152 + GFF5048 0.22 -0.3 149,152 + GFF5048 0.22 -0.4 149,152 + GFF5048 0.22 -0.2 149,152 + GFF5048 0.22 -0.9 149,152 + GFF5048 0.22 -0.6 149,152 + GFF5048 0.22 -0.1 149,153 - GFF5048 0.22 +0.2 149,153 - GFF5048 0.22 -0.9 149,153 - GFF5048 0.22 -0.5 149,153 - GFF5048 0.22 +0.2 149,153 - GFF5048 0.22 -0.4 149,153 - GFF5048 0.22 +0.2 149,153 - GFF5048 0.22 -0.5 149,153 - GFF5048 0.22 -0.1 149,153 - GFF5048 0.22 -0.4 149,153 - GFF5048 0.22 +0.7 149,153 - GFF5048 0.22 -0.7 149,153 - GFF5048 0.22 +0.1 149,153 - GFF5048 0.22 -1.0 149,153 - GFF5048 0.22 -0.3 149,156 + GFF5048 0.22 +1.0 149,156 + GFF5048 0.22 -0.2 149,156 + GFF5048 0.22 +0.3 149,156 + GFF5048 0.22 -0.5 149,156 + GFF5048 0.22 +0.8 149,156 + GFF5048 0.22 -0.4 149,156 + GFF5048 0.22 -1.0 149,156 + GFF5048 0.22 -0.7 149,156 + GFF5048 0.22 +0.6 149,156 + GFF5048 0.22 -0.8 149,156 + GFF5048 0.22 -0.7 149,157 - GFF5048 0.22 -0.3 149,157 - GFF5048 0.22 -1.2 149,157 - GFF5048 0.22 -1.9 149,157 - GFF5048 0.22 -1.8 149,157 - GFF5048 0.22 -1.0 149,157 - GFF5048 0.22 -0.4 149,157 - GFF5048 0.22 -0.9 149,157 - GFF5048 0.22 +0.7 149,157 - GFF5048 0.22 -0.4 149,157 - GFF5048 0.22 -0.4 149,157 - GFF5048 0.22 -0.9 149,393 + GFF5048 0.46 -0.6 149,393 + GFF5048 0.46 -0.1 149,393 + GFF5048 0.46 +0.6 149,393 + GFF5048 0.46 +1.3 149,393 + GFF5048 0.46 -1.3 149,394 - GFF5048 0.46 -0.1 149,394 - GFF5048 0.46 -0.0 149,454 + GFF5048 0.52 +0.0 149,455 - GFF5048 0.52 +0.3 149,455 - GFF5048 0.52 +0.8 149,534 + GFF5048 0.59 -0.7 149,534 + GFF5048 0.59 +1.4 149,534 + GFF5048 0.59 -0.5 149,534 + GFF5048 0.59 +0.3 149,534 + GFF5048 0.59 +1.4 149,535 - GFF5048 0.60 -1.0 149,535 - GFF5048 0.60 -0.4 149,535 - GFF5048 0.60 -0.5 149,655 + GFF5048 0.71 +0.7 149,655 + GFF5048 0.71 -0.7 149,655 + GFF5048 0.71 -0.2 149,655 + GFF5048 0.71 -0.9 149,655 + GFF5048 0.71 +0.5 149,655 + GFF5048 0.71 -2.3 149,656 - GFF5048 0.71 -0.9 149,656 - GFF5048 0.71 -0.9 149,656 - GFF5048 0.71 -1.0 149,656 - GFF5048 0.71 -1.0 149,700 + GFF5048 0.76 -2.3 149,700 + GFF5048 0.76 -0.3 149,700 + GFF5048 0.76 -0.1 149,700 + GFF5048 0.76 -0.8 149,700 + GFF5048 0.76 -0.2 149,700 + GFF5048 0.76 +1.3 149,700 + GFF5048 0.76 -0.2 149,700 + GFF5048 0.76 -1.2 149,700 + GFF5048 0.76 +1.1 149,700 + GFF5048 0.76 +0.1 149,700 + GFF5048 0.76 -0.4 149,700 + GFF5048 0.76 +0.8 149,700 + GFF5048 0.76 -0.3 149,700 + GFF5048 0.76 +0.0 149,700 + GFF5048 0.76 +0.1 149,700 + GFF5048 0.76 +0.6 149,700 + GFF5048 0.76 +0.1 149,700 + GFF5048 0.76 -1.7 149,700 + GFF5048 0.76 +0.3 149,700 + GFF5048 0.76 -0.7 149,701 + GFF5048 0.76 -1.0 149,701 - GFF5048 0.76 +0.1 149,701 - GFF5048 0.76 -0.6 149,701 - GFF5048 0.76 -0.7 149,701 - GFF5048 0.76 +0.3 149,701 - GFF5048 0.76 +0.4 149,701 - GFF5048 0.76 -0.4 149,701 - GFF5048 0.76 -0.4 149,701 - GFF5048 0.76 -1.4 149,701 - GFF5048 0.76 -0.1 149,701 - GFF5048 0.76 -1.5 149,701 - GFF5048 0.76 +0.0 149,701 - GFF5048 0.76 -0.6 149,701 - GFF5048 0.76 -0.2 149,701 - GFF5048 0.76 -0.5 149,701 - GFF5048 0.76 -0.5 149,701 - GFF5048 0.76 -0.7 149,701 - GFF5048 0.76 +0.1 149,701 - GFF5048 0.76 +0.1 149,701 - GFF5048 0.76 -0.6 149,701 - GFF5048 0.76 -0.2 149,701 - GFF5048 0.76 -0.5 149,701 - GFF5048 0.76 -1.2 149,701 - GFF5048 0.76 -1.2 149,851 + +0.3 149,852 - -0.2 149,852 - +2.1 149,891 + +0.1 149,891 + +0.8 149,892 - -0.5 149,892 - -0.9 149,893 + +1.3 149,893 + -0.6 149,893 + -0.1 149,893 + +0.3 149,893 + +0.3 149,893 + -1.3 149,893 + +0.8 149,893 + -0.1 149,893 + -0.2 149,893 + -0.2 149,894 - -0.2 149,894 - +0.8 149,894 - +0.6 149,894 - -0.5 149,894 - -2.0 149,894 - -0.1 149,917 - -0.8 149,947 + -0.2 149,947 + +0.9 149,947 + -0.3 149,947 + -0.1 149,947 + +0.2 149,947 + +1.0 149,948 - +0.5 149,948 - -1.7 149,948 - -0.4 149,948 - +0.8 149,948 - -0.5 149,948 - -0.4 149,948 - -1.1 149,948 - -0.2 149,948 - +0.0 149,959 + -1.3 149,959 + -0.9 149,959 + -0.3 149,960 - +0.5 150,003 + +1.1 150,003 + -0.3 150,003 + -0.5 150,003 + -0.2 150,003 + +0.3 150,004 - -0.1 150,004 - +0.1 150,004 - -0.8 150,004 - -0.6 150,004 - +0.4 150,653 - GFF5049 0.82 +0.4 150,653 - GFF5049 0.82 +0.0 150,741 + -0.2 150,741 + -0.6 150,741 + -0.1 150,741 + -0.7 150,741 + -0.7 150,741 + +0.3 150,742 - -0.2 150,742 - +0.3 150,742 - -0.3 150,742 - +1.6 150,742 - -1.0 150,742 - -0.7 150,742 - -0.1
Or see this region's nucleotide sequence