Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4963 and GFF4964 are separated by 63 nucleotides GFF4964 and GFF4965 are separated by 252 nucleotides
GFF4963 - Transcriptional regulator, AraC family, at 63,553 to 64,503
GFF4963
GFF4964 - Sulfate permease, at 64,567 to 66,030
GFF4964
GFF4965 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 66,283 to 66,996
GFF4965
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.652 kb on + strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 64.312 kb on + strand, within GFF4963 at 64.313 kb on - strand, within GFF4963 at 64.467 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.502 kb on - strand at 64.568 kb on + strand at 64.815 kb on - strand, within GFF4964 at 65.162 kb on + strand, within GFF4964 at 65.163 kb on - strand, within GFF4964 at 65.163 kb on - strand, within GFF4964 at 65.546 kb on + strand, within GFF4964 at 65.546 kb on + strand, within GFF4964 at 65.546 kb on + strand, within GFF4964 at 65.547 kb on - strand, within GFF4964 at 65.757 kb on - strand, within GFF4964 at 65.757 kb on - strand, within GFF4964 at 66.043 kb on + strand at 66.043 kb on + strand at 66.044 kb on - strand at 66.259 kb on + strand at 66.260 kb on - strand at 66.260 kb on - strand at 66.260 kb on - strand at 66.260 kb on - strand at 66.335 kb on + strand at 66.335 kb on + strand at 66.494 kb on + strand, within GFF4965 at 66.494 kb on + strand, within GFF4965 at 66.671 kb on + strand, within GFF4965 at 66.671 kb on + strand, within GFF4965
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 63,652 + GFF4963 0.10 -0.5 63,863 - GFF4963 0.33 +1.8 63,863 - GFF4963 0.33 -0.3 64,312 + GFF4963 0.80 +1.2 64,313 - GFF4963 0.80 -0.2 64,467 + +0.4 64,501 + +1.3 64,501 + +0.1 64,501 + -0.3 64,501 + +0.2 64,502 - +0.3 64,568 + -0.6 64,815 - GFF4964 0.17 -0.2 65,162 + GFF4964 0.41 -0.7 65,163 - GFF4964 0.41 -0.7 65,163 - GFF4964 0.41 -0.1 65,546 + GFF4964 0.67 -0.3 65,546 + GFF4964 0.67 -0.7 65,546 + GFF4964 0.67 -0.5 65,547 - GFF4964 0.67 -0.5 65,757 - GFF4964 0.81 -0.2 65,757 - GFF4964 0.81 -0.7 66,043 + -0.3 66,043 + -1.6 66,044 - -0.2 66,259 + +0.0 66,260 - -0.2 66,260 - -0.4 66,260 - +0.5 66,260 - +0.0 66,335 + -0.9 66,335 + +1.0 66,494 + GFF4965 0.30 -1.7 66,494 + GFF4965 0.30 -0.0 66,671 + GFF4965 0.54 -1.9 66,671 + GFF4965 0.54 -0.3
Or see this region's nucleotide sequence