Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4950 and GFF4951 overlap by 4 nucleotides GFF4951 and GFF4952 are separated by 40 nucleotides
GFF4950 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 46,409 to 47,437
GFF4950
GFF4951 - Uncharacterized oxidoreductase YdjG, at 47,434 to 48,438
GFF4951
GFF4952 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 48,479 to 49,333
GFF4952
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 46.574 kb on + strand, within GFF4950 at 47.054 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.836 kb on + strand, within GFF4951 at 47.837 kb on - strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 48.091 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951 at 48.478 kb on + strand at 48.478 kb on - strand at 48.479 kb on - strand at 48.479 kb on - strand at 48.479 kb on - strand at 48.653 kb on + strand, within GFF4952 at 48.653 kb on + strand, within GFF4952 at 48.653 kb on + strand, within GFF4952 at 48.654 kb on - strand, within GFF4952 at 48.654 kb on - strand, within GFF4952 at 48.654 kb on - strand, within GFF4952 at 48.654 kb on - strand, within GFF4952 at 48.734 kb on + strand, within GFF4952 at 49.206 kb on - strand, within GFF4952 at 49.307 kb on + strand at 49.307 kb on + strand at 49.307 kb on + strand at 49.307 kb on + strand at 49.307 kb on + strand at 49.308 kb on - strand at 49.331 kb on + strand at 49.332 kb on - strand at 49.375 kb on - strand at 49.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 46,574 + GFF4950 0.16 +0.2 47,054 + GFF4950 0.63 +0.5 47,084 + GFF4950 0.66 -0.5 47,084 + GFF4950 0.66 -1.0 47,166 - GFF4950 0.74 +0.5 47,166 - GFF4950 0.74 -1.9 47,166 - GFF4950 0.74 -0.6 47,836 + GFF4951 0.40 -0.9 47,837 - GFF4951 0.40 +0.2 47,848 + GFF4951 0.41 -0.5 47,848 + GFF4951 0.41 -0.1 47,849 - GFF4951 0.41 +0.0 47,849 - GFF4951 0.41 -0.2 47,849 - GFF4951 0.41 -1.0 47,978 - GFF4951 0.54 +0.1 47,978 - GFF4951 0.54 -1.9 48,091 + GFF4951 0.65 -0.5 48,314 + GFF4951 0.88 -1.2 48,314 + GFF4951 0.88 +2.8 48,478 + +0.0 48,478 - -0.6 48,479 - +0.5 48,479 - -0.9 48,479 - +0.9 48,653 + GFF4952 0.20 +0.1 48,653 + GFF4952 0.20 +0.0 48,653 + GFF4952 0.20 -0.0 48,654 - GFF4952 0.20 -0.4 48,654 - GFF4952 0.20 +0.2 48,654 - GFF4952 0.20 -1.2 48,654 - GFF4952 0.20 -0.9 48,734 + GFF4952 0.30 +0.1 49,206 - GFF4952 0.85 -0.2 49,307 + -0.0 49,307 + -0.6 49,307 + -1.2 49,307 + -0.7 49,307 + -0.5 49,308 - -0.2 49,331 + +0.5 49,332 - +0.1 49,375 - -0.9 49,375 - +0.2
Or see this region's nucleotide sequence