Strain Fitness in Variovorax sp. SCN45 around GFF4907

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4907 and GFF4908 are separated by 30 nucleotides GFF4907 - NAD(P) transhydrogenase C-domain of subunit alpha (EC 1.6.1.2), at 49 to 387 GFF4907 GFF4908 - NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2), at 418 to 1,548 GFF4908 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.024 kb on + strandat 0.024 kb on + strandat 0.024 kb on + strandat 0.024 kb on + strandat 0.024 kb on + strandat 0.024 kb on + strandat 0.024 kb on + strandat 0.025 kb on - strandat 0.025 kb on - strandat 0.025 kb on - strandat 0.025 kb on - strandat 0.025 kb on - strandat 0.025 kb on - strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.082 kb on - strandat 0.082 kb on - strandat 0.323 kb on + strand, within GFF4907at 0.323 kb on + strand, within GFF4907at 0.324 kb on - strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.332 kb on + strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.333 kb on - strand, within GFF4907at 0.370 kb on - strandat 0.376 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.419 kb on + strandat 0.420 kb on - strandat 0.420 kb on - strandat 0.420 kb on - strandat 0.420 kb on - strandat 0.420 kb on - strandat 0.420 kb on - strandat 0.545 kb on + strand, within GFF4908at 0.545 kb on + strand, within GFF4908at 0.545 kb on + strand, within GFF4908at 0.545 kb on + strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.546 kb on - strand, within GFF4908at 0.905 kb on + strand, within GFF4908at 0.905 kb on + strand, within GFF4908at 0.905 kb on + strand, within GFF4908at 0.905 kb on + strand, within GFF4908at 0.905 kb on + strand, within GFF4908at 0.906 kb on - strand, within GFF4908at 0.906 kb on - strand, within GFF4908at 0.906 kb on - strand, within GFF4908at 0.906 kb on - strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.106 kb on + strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.107 kb on - strand, within GFF4908at 1.136 kb on + strand, within GFF4908at 1.136 kb on + strand, within GFF4908at 1.136 kb on + strand, within GFF4908at 1.136 kb on + strand, within GFF4908at 1.136 kb on + strand, within GFF4908at 1.137 kb on - strand, within GFF4908at 1.137 kb on - strand, within GFF4908at 1.137 kb on - strand, within GFF4908

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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24 + -0.2
24 + +0.3
24 + -0.3
24 + +0.7
24 + +0.1
24 + -0.1
24 + -0.5
25 - -0.7
25 - +0.8
25 - -0.8
25 - -0.4
25 - -0.6
25 - -0.6
81 + -1.2
81 + +0.1
81 + -0.5
81 + -0.7
81 + -0.5
82 - -0.5
82 - -0.8
323 + GFF4907 0.81 +1.1
323 + GFF4907 0.81 +0.1
324 - GFF4907 0.81 +0.3
332 + GFF4907 0.83 +0.2
332 + GFF4907 0.83 +0.5
332 + GFF4907 0.83 -0.4
332 + GFF4907 0.83 +0.6
332 + GFF4907 0.83 +0.1
332 + GFF4907 0.83 +0.5
332 + GFF4907 0.83 -0.6
332 + GFF4907 0.83 -0.0
332 + GFF4907 0.83 -0.6
332 + GFF4907 0.83 -0.2
332 + GFF4907 0.83 +0.4
332 + GFF4907 0.83 -0.3
333 - GFF4907 0.84 -1.0
333 - GFF4907 0.84 -0.7
333 - GFF4907 0.84 +0.3
333 - GFF4907 0.84 +0.3
333 - GFF4907 0.84 -0.6
333 - GFF4907 0.84 +0.3
333 - GFF4907 0.84 -2.1
333 - GFF4907 0.84 +0.8
333 - GFF4907 0.84 -0.5
333 - GFF4907 0.84 -0.4
333 - GFF4907 0.84 +1.0
333 - GFF4907 0.84 -0.2
333 - GFF4907 0.84 +0.2
333 - GFF4907 0.84 -0.4
333 - GFF4907 0.84 -0.3
333 - GFF4907 0.84 +0.3
333 - GFF4907 0.84 +1.8
333 - GFF4907 0.84 +1.8
333 - GFF4907 0.84 -1.8
333 - GFF4907 0.84 -0.5
333 - GFF4907 0.84 -0.2
333 - GFF4907 0.84 -0.2
333 - GFF4907 0.84 -0.4
370 - -0.0
376 + -0.2
419 + +1.1
419 + +0.3
419 + -0.2
419 + +0.1
419 + -0.8
419 + -0.2
419 + -0.2
419 + -0.4
419 + +0.8
419 + +0.2
419 + -0.7
419 + -2.1
419 + +0.8
419 + +1.3
420 - -1.5
420 - -0.3
420 - +0.3
420 - -0.3
420 - -0.3
420 - -0.2
545 + GFF4908 0.11 +0.7
545 + GFF4908 0.11 -0.7
545 + GFF4908 0.11 -0.1
545 + GFF4908 0.11 -0.1
546 - GFF4908 0.11 +0.3
546 - GFF4908 0.11 -0.9
546 - GFF4908 0.11 +0.7
546 - GFF4908 0.11 +0.7
546 - GFF4908 0.11 -0.5
546 - GFF4908 0.11 -0.5
905 + GFF4908 0.43 +0.4
905 + GFF4908 0.43 -1.1
905 + GFF4908 0.43 -0.3
905 + GFF4908 0.43 +0.2
905 + GFF4908 0.43 -0.2
906 - GFF4908 0.43 +0.1
906 - GFF4908 0.43 -0.8
906 - GFF4908 0.43 -0.2
906 - GFF4908 0.43 -0.3
1,106 + GFF4908 0.61 +0.3
1,106 + GFF4908 0.61 -0.0
1,106 + GFF4908 0.61 +0.3
1,106 + GFF4908 0.61 +0.5
1,106 + GFF4908 0.61 -0.9
1,106 + GFF4908 0.61 -0.1
1,106 + GFF4908 0.61 -0.4
1,107 - GFF4908 0.61 -0.7
1,107 - GFF4908 0.61 -0.2
1,107 - GFF4908 0.61 +0.1
1,107 - GFF4908 0.61 +0.2
1,107 - GFF4908 0.61 +0.8
1,107 - GFF4908 0.61 -0.8
1,107 - GFF4908 0.61 -0.4
1,107 - GFF4908 0.61 +0.7
1,107 - GFF4908 0.61 -1.2
1,107 - GFF4908 0.61 +1.3
1,107 - GFF4908 0.61 +0.0
1,107 - GFF4908 0.61 +0.6
1,107 - GFF4908 0.61 -0.3
1,107 - GFF4908 0.61 +0.8
1,107 - GFF4908 0.61 +0.8
1,107 - GFF4908 0.61 -0.5
1,107 - GFF4908 0.61 -0.6
1,107 - GFF4908 0.61 -0.3
1,107 - GFF4908 0.61 -0.5
1,107 - GFF4908 0.61 -0.5
1,136 + GFF4908 0.63 -0.6
1,136 + GFF4908 0.63 +0.7
1,136 + GFF4908 0.63 +0.0
1,136 + GFF4908 0.63 -0.2
1,136 + GFF4908 0.63 +1.4
1,137 - GFF4908 0.64 +0.8
1,137 - GFF4908 0.64 -1.2
1,137 - GFF4908 0.64 +1.8

Or see this region's nucleotide sequence