Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4829 and GFF4830 are separated by 96 nucleotides GFF4830 and GFF4831 are separated by 115 nucleotides GFF4831 and GFF4832 are separated by 217 nucleotides
GFF4829 - Isocitrate lyase (EC 4.1.3.1), at 198,708 to 200,039
GFF4829
GFF4830 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 200,136 to 201,098
GFF4830
GFF4831 - Beta-glucoside bgl operon antiterminator, BglG family, at 201,214 to 201,525
GFF4831
GFF4832 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 201,743 to 203,650
GFF4832
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.180 kb on - strand, within GFF4829 at 199.180 kb on - strand, within GFF4829 at 199.180 kb on - strand, within GFF4829 at 199.180 kb on - strand, within GFF4829 at 199.518 kb on + strand, within GFF4829 at 199.519 kb on - strand, within GFF4829 at 199.519 kb on - strand, within GFF4829 at 199.566 kb on + strand, within GFF4829 at 199.567 kb on - strand, within GFF4829 at 199.677 kb on + strand, within GFF4829 at 199.678 kb on - strand, within GFF4829 at 199.764 kb on + strand, within GFF4829 at 199.764 kb on + strand, within GFF4829 at 199.765 kb on - strand, within GFF4829 at 199.765 kb on - strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.770 kb on + strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.771 kb on - strand, within GFF4829 at 199.837 kb on - strand, within GFF4829 at 199.863 kb on + strand, within GFF4829 at 199.863 kb on + strand, within GFF4829 at 199.863 kb on + strand, within GFF4829 at 199.863 kb on + strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.864 kb on - strand, within GFF4829 at 199.911 kb on + strand at 199.911 kb on + strand at 199.911 kb on + strand at 199.912 kb on - strand at 199.912 kb on - strand at 199.951 kb on - strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.067 kb on - strand at 200.078 kb on + strand at 200.079 kb on - strand at 200.079 kb on - strand at 200.079 kb on - strand at 200.215 kb on + strand at 200.302 kb on + strand, within GFF4830 at 200.302 kb on + strand, within GFF4830 at 200.302 kb on + strand, within GFF4830 at 200.393 kb on - strand, within GFF4830 at 200.479 kb on + strand, within GFF4830 at 200.480 kb on - strand, within GFF4830 at 200.480 kb on - strand, within GFF4830 at 200.515 kb on + strand, within GFF4830 at 200.659 kb on + strand, within GFF4830 at 201.026 kb on + strand at 201.084 kb on + strand at 201.084 kb on + strand at 201.084 kb on + strand at 201.084 kb on + strand at 201.084 kb on + strand at 201.084 kb on + strand at 201.157 kb on + strand at 201.158 kb on - strand at 201.223 kb on + strand at 201.223 kb on + strand at 201.223 kb on + strand at 201.224 kb on - strand at 201.224 kb on - strand at 201.555 kb on + strand at 201.586 kb on + strand at 201.586 kb on + strand at 201.586 kb on + strand at 201.586 kb on + strand at 201.586 kb on + strand at 201.587 kb on - strand at 201.602 kb on - strand at 201.602 kb on - strand at 201.681 kb on + strand at 201.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 199,180 - GFF4829 0.35 +0.3 199,180 - GFF4829 0.35 -1.1 199,180 - GFF4829 0.35 +0.1 199,180 - GFF4829 0.35 +2.7 199,518 + GFF4829 0.61 +0.8 199,519 - GFF4829 0.61 -1.1 199,519 - GFF4829 0.61 -0.3 199,566 + GFF4829 0.64 +0.8 199,567 - GFF4829 0.64 -0.3 199,677 + GFF4829 0.73 +0.1 199,678 - GFF4829 0.73 -0.1 199,764 + GFF4829 0.79 +1.1 199,764 + GFF4829 0.79 -1.3 199,765 - GFF4829 0.79 +0.1 199,765 - GFF4829 0.79 +0.9 199,770 + GFF4829 0.80 -0.2 199,770 + GFF4829 0.80 -0.1 199,770 + GFF4829 0.80 -0.9 199,770 + GFF4829 0.80 +1.2 199,770 + GFF4829 0.80 -1.2 199,770 + GFF4829 0.80 +0.7 199,770 + GFF4829 0.80 -0.5 199,770 + GFF4829 0.80 -0.4 199,771 - GFF4829 0.80 -0.6 199,771 - GFF4829 0.80 -0.4 199,771 - GFF4829 0.80 +0.1 199,771 - GFF4829 0.80 -0.3 199,771 - GFF4829 0.80 +0.5 199,771 - GFF4829 0.80 +0.1 199,837 - GFF4829 0.85 +0.3 199,863 + GFF4829 0.87 +0.5 199,863 + GFF4829 0.87 +0.7 199,863 + GFF4829 0.87 -0.2 199,863 + GFF4829 0.87 -1.4 199,864 - GFF4829 0.87 -0.2 199,864 - GFF4829 0.87 -0.3 199,864 - GFF4829 0.87 +1.9 199,864 - GFF4829 0.87 -2.5 199,864 - GFF4829 0.87 -0.2 199,864 - GFF4829 0.87 +0.4 199,864 - GFF4829 0.87 -2.1 199,911 + +1.3 199,911 + +0.7 199,911 + -0.1 199,912 - -0.5 199,912 - -1.0 199,951 - -0.1 200,066 + +0.1 200,066 + -0.6 200,066 + +0.4 200,067 - -0.1 200,078 + +0.1 200,079 - +0.1 200,079 - -1.3 200,079 - -0.7 200,215 + -0.7 200,302 + GFF4830 0.17 -0.2 200,302 + GFF4830 0.17 -0.9 200,302 + GFF4830 0.17 -0.9 200,393 - GFF4830 0.27 +1.1 200,479 + GFF4830 0.36 -0.4 200,480 - GFF4830 0.36 -0.6 200,480 - GFF4830 0.36 -0.5 200,515 + GFF4830 0.39 -1.0 200,659 + GFF4830 0.54 -0.2 201,026 + +0.9 201,084 + -0.8 201,084 + +0.1 201,084 + -0.3 201,084 + -1.2 201,084 + -0.3 201,084 + +0.2 201,157 + -0.4 201,158 - -0.0 201,223 + +0.2 201,223 + -0.5 201,223 + +0.1 201,224 - -0.2 201,224 - +0.0 201,555 + -1.1 201,586 + +0.2 201,586 + -0.4 201,586 + +1.1 201,586 + -0.9 201,586 + -1.2 201,587 - -0.7 201,602 - -1.2 201,602 - -1.2 201,681 + -1.7 201,681 + +0.7
Or see this region's nucleotide sequence