Strain Fitness in Variovorax sp. SCN45 around GFF480

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF479 and GFF480 are separated by 502 nucleotidesGFF480 and GFF481 are separated by 21 nucleotides GFF479 - Fumarate hydratase class II (EC 4.2.1.2), at 516,595 to 517,992 GFF479 GFF480 - Glycine betaine/L-proline transport ATP-binding protein ProV (TC 3.A.1.12.1), at 518,495 to 519,751 GFF480 GFF481 - Glycine betaine/L-proline transport system permease protein ProW (TC 3.A.1.12.1), at 519,773 to 520,948 GFF481 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1at 518.085 kb on + strandat 518.085 kb on + strandat 518.085 kb on + strandat 518.085 kb on + strandat 518.085 kb on + strandat 518.086 kb on - strandat 518.086 kb on - strandat 518.086 kb on - strandat 518.086 kb on - strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.110 kb on + strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.111 kb on - strandat 518.209 kb on + strandat 518.210 kb on - strandat 518.478 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.494 kb on + strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.495 kb on - strandat 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 519.152 kb on - strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.425 kb on + strand, within GFF480at 519.426 kb on - strand, within GFF480at 519.426 kb on - strand, within GFF480at 519.449 kb on + strand, within GFF480at 519.449 kb on + strand, within GFF480at 519.812 kb on - strandat 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.557 kb on - strand, within GFF481at 520.557 kb on - strand, within GFF481

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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518,085 + -0.1
518,085 + -1.9
518,085 + -0.8
518,085 + +0.8
518,085 + -0.2
518,086 - +0.6
518,086 - -0.4
518,086 - +1.3
518,086 - +0.2
518,110 + +0.4
518,110 + -0.5
518,110 + -1.6
518,110 + -0.3
518,110 + -0.4
518,110 + +0.3
518,110 + -1.6
518,111 - +0.1
518,111 - -0.4
518,111 - -0.9
518,111 - +0.4
518,111 - +0.4
518,111 - +0.7
518,111 - -0.7
518,111 - +0.2
518,111 - -0.0
518,111 - -0.2
518,111 - -0.2
518,111 - +0.2
518,111 - +0.2
518,111 - +0.4
518,111 - -0.1
518,209 + -0.7
518,210 - -0.6
518,478 + -0.5
518,494 + +0.0
518,494 + -0.4
518,494 + -0.3
518,494 + -0.5
518,494 + +0.7
518,494 + -0.3
518,494 + -0.1
518,494 + -0.2
518,494 + -0.1
518,495 - -0.8
518,495 - -0.1
518,495 - -0.3
518,495 - -2.0
518,495 - -0.2
518,495 - -0.1
518,495 - -0.1
518,495 - +0.5
518,495 - -0.7
518,495 - -1.1
518,495 - -0.1
518,975 + GFF480 0.38 -0.6
518,975 + GFF480 0.38 -1.6
518,975 + GFF480 0.38 +0.1
518,975 + GFF480 0.38 -0.5
519,152 - GFF480 0.52 -0.5
519,272 + GFF480 0.62 +0.6
519,272 + GFF480 0.62 -1.2
519,272 + GFF480 0.62 -1.1
519,272 + GFF480 0.62 -1.0
519,272 + GFF480 0.62 -1.2
519,272 + GFF480 0.62 -0.9
519,272 + GFF480 0.62 -1.1
519,272 + GFF480 0.62 +0.6
519,272 + GFF480 0.62 -1.4
519,272 + GFF480 0.62 -0.6
519,272 + GFF480 0.62 -1.6
519,273 - GFF480 0.62 +0.9
519,273 - GFF480 0.62 +0.1
519,273 - GFF480 0.62 +0.1
519,273 - GFF480 0.62 -0.1
519,273 - GFF480 0.62 +0.6
519,273 - GFF480 0.62 -0.3
519,273 - GFF480 0.62 +0.3
519,273 - GFF480 0.62 +0.3
519,273 - GFF480 0.62 -0.5
519,273 - GFF480 0.62 +0.7
519,273 - GFF480 0.62 -0.5
519,425 + GFF480 0.74 -0.1
519,426 - GFF480 0.74 -0.6
519,426 - GFF480 0.74 +0.2
519,449 + GFF480 0.76 -0.4
519,449 + GFF480 0.76 -0.0
519,812 - -0.3
520,409 + GFF481 0.54 -1.9
520,409 + GFF481 0.54 +0.3
520,409 + GFF481 0.54 -0.6
520,409 + GFF481 0.54 +1.1
520,409 + GFF481 0.54 -1.2
520,410 - GFF481 0.54 -0.7
520,410 - GFF481 0.54 -0.4
520,410 - GFF481 0.54 -0.1
520,410 - GFF481 0.54 +0.1
520,410 - GFF481 0.54 -0.4
520,410 - GFF481 0.54 -0.7
520,449 + GFF481 0.57 -0.2
520,449 + GFF481 0.57 +0.7
520,449 + GFF481 0.57 -0.2
520,449 + GFF481 0.57 +1.0
520,450 - GFF481 0.58 -0.3
520,450 - GFF481 0.58 -0.3
520,450 - GFF481 0.58 +0.0
520,450 - GFF481 0.58 -2.0
520,557 - GFF481 0.67 -1.1
520,557 - GFF481 0.67 +0.0

Or see this region's nucleotide sequence