Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4710 and GFF4711 overlap by 1 nucleotides GFF4711 and GFF4712 are separated by 109 nucleotides GFF4712 and GFF4713 are separated by 111 nucleotides GFF4713 and GFF4714 are separated by 11 nucleotides GFF4714 and GFF4715 overlap by 1 nucleotides
GFF4710 - MutT/Nudix family protein, at 73,904 to 74,380
GFF4710
GFF4711 - Transamidase GatB domain protein, at 74,380 to 74,829
GFF4711
GFF4712 - SSU ribosomal protein S21p, at 74,939 to 75,151
GFF4712
GFF4713 - Uncharacterized protein YhiN, at 75,263 to 76,468
GFF4713
GFF4714 - putative lipoprotein, at 76,480 to 77,271
GFF4714
GFF4715 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 77,271 to 78,401
GFF4715
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.940 kb on + strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.941 kb on - strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.943 kb on + strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 74.944 kb on - strand at 75.266 kb on + strand at 75.266 kb on + strand at 75.266 kb on + strand at 75.266 kb on + strand at 75.267 kb on - strand at 75.267 kb on - strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.313 kb on + strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.314 kb on - strand at 75.315 kb on + strand at 75.315 kb on + strand at 75.315 kb on + strand at 75.315 kb on + strand at 75.315 kb on + strand at 75.344 kb on + strand at 75.344 kb on + strand at 75.444 kb on + strand, within GFF4713 at 75.444 kb on + strand, within GFF4713 at 75.444 kb on + strand, within GFF4713 at 75.445 kb on - strand, within GFF4713 at 75.445 kb on - strand, within GFF4713 at 75.445 kb on - strand, within GFF4713 at 75.706 kb on - strand, within GFF4713 at 75.706 kb on - strand, within GFF4713 at 75.706 kb on - strand, within GFF4713 at 75.706 kb on - strand, within GFF4713 at 75.706 kb on - strand, within GFF4713 at 75.841 kb on - strand, within GFF4713 at 75.841 kb on - strand, within GFF4713 at 75.876 kb on - strand, within GFF4713 at 75.876 kb on - strand, within GFF4713 at 76.029 kb on + strand, within GFF4713 at 76.053 kb on - strand, within GFF4713 at 76.053 kb on - strand, within GFF4713 at 76.225 kb on - strand, within GFF4713 at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.518 kb on - strand at 76.518 kb on - strand at 76.518 kb on - strand at 76.535 kb on + strand at 76.535 kb on + strand at 76.535 kb on + strand at 76.536 kb on - strand at 76.536 kb on - strand at 76.536 kb on - strand at 76.653 kb on - strand, within GFF4714 at 76.653 kb on - strand, within GFF4714 at 76.653 kb on - strand, within GFF4714 at 76.736 kb on + strand, within GFF4714 at 76.736 kb on + strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.826 kb on + strand, within GFF4714 at 76.826 kb on + strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 77.212 kb on + strand at 77.212 kb on + strand at 77.213 kb on - strand at 77.326 kb on + strand at 77.327 kb on - strand at 77.327 kb on - strand at 77.327 kb on - strand at 77.344 kb on + strand at 77.344 kb on + strand at 77.344 kb on + strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.408 kb on - strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 74,564 + GFF4711 0.41 -0.7 74,564 + GFF4711 0.41 +0.0 74,564 + GFF4711 0.41 +0.7 74,564 + GFF4711 0.41 -0.4 74,564 + GFF4711 0.41 +0.3 74,564 + GFF4711 0.41 +0.3 74,565 - GFF4711 0.41 +1.7 74,565 - GFF4711 0.41 -0.2 74,565 - GFF4711 0.41 -0.2 74,565 - GFF4711 0.41 -0.5 74,565 - GFF4711 0.41 +1.4 74,565 - GFF4711 0.41 +1.1 74,565 - GFF4711 0.41 +0.2 74,565 - GFF4711 0.41 -0.7 74,565 - GFF4711 0.41 +0.1 74,565 - GFF4711 0.41 -0.6 74,565 - GFF4711 0.41 -1.6 74,565 - GFF4711 0.41 +2.2 74,565 - GFF4711 0.41 -0.1 74,565 - GFF4711 0.41 -0.3 74,565 - GFF4711 0.41 -0.0 74,940 + -0.0 74,940 + -0.5 74,940 + -0.0 74,940 + -0.2 74,940 + -0.7 74,940 + +0.8 74,940 + -1.2 74,940 + -0.4 74,940 + +0.1 74,940 + -0.5 74,940 + -0.7 74,941 - +0.2 74,941 - +0.7 74,941 - -0.5 74,941 - -0.7 74,941 - +1.1 74,941 - -0.1 74,941 - -1.1 74,941 - -0.3 74,941 - -0.1 74,941 - +0.2 74,941 - +1.3 74,941 - -0.5 74,941 - -0.4 74,941 - -0.3 74,941 - +0.5 74,941 - -0.2 74,943 + -1.0 74,943 + +0.3 74,943 + +0.3 74,943 + -0.4 74,943 + -1.0 74,943 + +0.7 74,943 + -0.8 74,944 - +0.2 74,944 - -0.5 74,944 - -0.3 74,944 - -0.2 74,944 - -0.2 74,944 - -0.5 74,944 - -0.5 74,944 - +1.2 75,266 + +2.1 75,266 + +0.6 75,266 + -1.6 75,266 + +0.6 75,267 - +0.2 75,267 - -0.1 75,313 + -0.3 75,313 + -0.6 75,313 + -0.4 75,313 + -0.1 75,313 + +0.5 75,313 + +1.7 75,313 + -0.2 75,313 + -0.7 75,313 + -0.3 75,314 - -0.5 75,314 - +0.6 75,314 - +0.1 75,314 - +1.0 75,314 - -0.4 75,314 - -0.0 75,314 - +0.9 75,314 - -0.5 75,314 - -1.3 75,314 - -0.8 75,315 + -0.7 75,315 + +3.2 75,315 + +0.5 75,315 + -0.9 75,315 + -0.4 75,344 + -0.0 75,344 + +1.0 75,444 + GFF4713 0.15 -0.9 75,444 + GFF4713 0.15 +0.2 75,444 + GFF4713 0.15 -0.3 75,445 - GFF4713 0.15 -0.4 75,445 - GFF4713 0.15 -0.3 75,445 - GFF4713 0.15 -0.8 75,706 - GFF4713 0.37 -0.4 75,706 - GFF4713 0.37 +0.1 75,706 - GFF4713 0.37 -0.5 75,706 - GFF4713 0.37 -0.3 75,706 - GFF4713 0.37 +0.2 75,841 - GFF4713 0.48 -0.2 75,841 - GFF4713 0.48 +1.7 75,876 - GFF4713 0.51 +0.2 75,876 - GFF4713 0.51 +0.7 76,029 + GFF4713 0.64 -0.5 76,053 - GFF4713 0.66 +0.3 76,053 - GFF4713 0.66 -2.6 76,225 - GFF4713 0.80 -1.1 76,517 + +0.2 76,517 + +1.7 76,517 + +0.1 76,517 + +0.2 76,517 + +1.1 76,517 + -0.5 76,517 + -0.4 76,517 + -0.2 76,518 - -0.1 76,518 - +0.9 76,518 - +1.7 76,535 + -0.5 76,535 + -1.3 76,535 + -0.8 76,536 - -0.1 76,536 - -0.6 76,536 - -1.7 76,653 - GFF4714 0.22 -0.2 76,653 - GFF4714 0.22 -0.6 76,653 - GFF4714 0.22 -0.1 76,736 + GFF4714 0.32 -0.3 76,736 + GFF4714 0.32 -0.2 76,737 - GFF4714 0.32 +0.5 76,737 - GFF4714 0.32 -0.6 76,737 - GFF4714 0.32 -0.1 76,737 - GFF4714 0.32 -0.3 76,737 - GFF4714 0.32 -0.0 76,826 + GFF4714 0.44 +0.7 76,826 + GFF4714 0.44 +1.2 76,827 - GFF4714 0.44 -1.9 76,827 - GFF4714 0.44 -0.4 76,827 - GFF4714 0.44 -0.2 76,827 - GFF4714 0.44 -0.5 76,827 - GFF4714 0.44 -0.7 76,997 + GFF4714 0.65 -0.8 76,997 + GFF4714 0.65 -0.4 76,997 + GFF4714 0.65 +0.1 76,998 - GFF4714 0.65 -0.0 76,998 - GFF4714 0.65 +0.1 76,998 - GFF4714 0.65 -0.2 76,998 - GFF4714 0.65 -0.7 76,998 - GFF4714 0.65 -0.7 77,212 + +0.0 77,212 + -0.3 77,213 - -0.1 77,326 + -0.0 77,327 - -0.5 77,327 - +0.2 77,327 - -0.1 77,344 + -0.9 77,344 + -0.7 77,344 + -1.5 77,345 - +0.2 77,345 - -0.2 77,345 - +0.3 77,345 - -0.6 77,345 - +1.7 77,392 + GFF4715 0.11 -0.2 77,392 + GFF4715 0.11 -1.1 77,392 + GFF4715 0.11 -0.9 77,392 + GFF4715 0.11 +0.5 77,392 + GFF4715 0.11 +1.1 77,393 - GFF4715 0.11 -0.2 77,393 - GFF4715 0.11 +0.4 77,393 - GFF4715 0.11 -0.4 77,393 - GFF4715 0.11 +0.5 77,393 - GFF4715 0.11 -2.4 77,393 - GFF4715 0.11 -0.7 77,393 - GFF4715 0.11 +0.4 77,393 - GFF4715 0.11 +1.1 77,393 - GFF4715 0.11 -1.3 77,393 - GFF4715 0.11 -0.3 77,393 - GFF4715 0.11 -0.3 77,407 + GFF4715 0.12 +0.7 77,407 + GFF4715 0.12 +0.3 77,407 + GFF4715 0.12 -0.2 77,407 + GFF4715 0.12 -0.3 77,407 + GFF4715 0.12 +1.1 77,408 - GFF4715 0.12 -0.1 77,419 + GFF4715 0.13 +1.1 77,419 + GFF4715 0.13 +0.3 77,419 + GFF4715 0.13 -0.8 77,419 + GFF4715 0.13 -0.5 77,420 - GFF4715 0.13 -0.0 77,420 - GFF4715 0.13 +0.1 77,420 - GFF4715 0.13 -0.5 77,420 - GFF4715 0.13 +0.1 77,420 - GFF4715 0.13 -0.9 77,420 - GFF4715 0.13 -0.6
Or see this region's nucleotide sequence