Strain Fitness in Variovorax sp. SCN45 around GFF4704

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4703 and GFF4704 are separated by 113 nucleotidesGFF4704 and GFF4705 overlap by 1 nucleotides GFF4703 - Xylitol dehydrogenase (EC 1.1.1.9), at 66,897 to 67,946 GFF4703 GFF4704 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 68,060 to 68,884 GFF4704 GFF4705 - Monooxygenase, flavin-binding family, at 68,884 to 70,212 GFF4705 Position (kb) 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.694 kb on - strand, within GFF4703at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.342 kb on + strand, within GFF4704at 68.550 kb on - strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.617 kb on + strand, within GFF4704at 69.052 kb on + strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.053 kb on - strand, within GFF4705at 69.130 kb on + strand, within GFF4705at 69.158 kb on - strand, within GFF4705at 69.307 kb on + strand, within GFF4705at 69.308 kb on - strand, within GFF4705at 69.403 kb on + strand, within GFF4705at 69.403 kb on + strand, within GFF4705at 69.404 kb on - strand, within GFF4705at 69.493 kb on + strand, within GFF4705at 69.530 kb on - strand, within GFF4705at 69.530 kb on - strand, within GFF4705at 69.530 kb on - strand, within GFF4705at 69.532 kb on + strand, within GFF4705at 69.532 kb on + strand, within GFF4705at 69.532 kb on + strand, within GFF4705at 69.533 kb on - strand, within GFF4705at 69.533 kb on - strand, within GFF4705at 69.533 kb on - strand, within GFF4705at 69.547 kb on + strand, within GFF4705at 69.547 kb on + strand, within GFF4705at 69.547 kb on + strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.548 kb on - strand, within GFF4705at 69.682 kb on + strand, within GFF4705at 69.682 kb on + strand, within GFF4705at 69.683 kb on - strand, within GFF4705at 69.683 kb on - strand, within GFF4705at 69.683 kb on - strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.691 kb on + strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.692 kb on - strand, within GFF4705at 69.820 kb on + strand, within GFF4705at 69.821 kb on - strand, within GFF4705at 69.821 kb on - strand, within GFF4705at 69.821 kb on - strand, within GFF4705at 69.847 kb on + strand, within GFF4705at 69.847 kb on + strand, within GFF4705at 69.847 kb on + strand, within GFF4705at 69.847 kb on + strand, within GFF4705at 69.859 kb on + strand, within GFF4705

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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67,195 + GFF4703 0.28 -0.8
67,195 + GFF4703 0.28 -0.5
67,195 + GFF4703 0.28 -0.5
67,196 - GFF4703 0.28 -0.6
67,196 - GFF4703 0.28 -0.7
67,202 + GFF4703 0.29 -2.2
67,202 + GFF4703 0.29 -0.7
67,202 + GFF4703 0.29 -0.2
67,202 + GFF4703 0.29 +0.7
67,202 + GFF4703 0.29 -0.6
67,202 + GFF4703 0.29 -0.4
67,203 - GFF4703 0.29 +0.1
67,203 - GFF4703 0.29 -1.0
67,206 + GFF4703 0.29 -1.7
67,206 + GFF4703 0.29 -0.7
67,206 + GFF4703 0.29 -1.0
67,206 + GFF4703 0.29 +1.8
67,206 + GFF4703 0.29 -1.1
67,206 + GFF4703 0.29 +0.4
67,206 + GFF4703 0.29 -0.5
67,206 + GFF4703 0.29 -1.9
67,206 + GFF4703 0.29 +1.1
67,207 - GFF4703 0.30 -1.0
67,207 - GFF4703 0.30 -0.1
67,207 - GFF4703 0.30 +0.8
67,207 - GFF4703 0.30 -0.4
67,207 - GFF4703 0.30 +0.1
67,207 - GFF4703 0.30 -0.2
67,694 - GFF4703 0.76 -0.1
68,231 + GFF4704 0.21 -0.7
68,231 + GFF4704 0.21 +0.7
68,231 + GFF4704 0.21 +0.0
68,231 + GFF4704 0.21 -0.6
68,231 + GFF4704 0.21 -0.8
68,342 + GFF4704 0.34 +2.2
68,550 - GFF4704 0.59 -0.9
68,615 + GFF4704 0.67 +0.1
68,615 + GFF4704 0.67 -0.9
68,615 + GFF4704 0.67 -0.3
68,615 + GFF4704 0.67 -1.0
68,615 + GFF4704 0.67 -0.3
68,615 + GFF4704 0.67 +0.1
68,615 + GFF4704 0.67 -0.3
68,616 - GFF4704 0.67 -0.8
68,616 - GFF4704 0.67 +1.0
68,616 - GFF4704 0.67 -1.3
68,616 - GFF4704 0.67 -1.3
68,616 - GFF4704 0.67 +0.6
68,617 + GFF4704 0.68 -0.8
69,052 + GFF4705 0.13 -0.7
69,053 - GFF4705 0.13 +0.6
69,053 - GFF4705 0.13 -0.4
69,053 - GFF4705 0.13 -0.3
69,053 - GFF4705 0.13 +0.2
69,053 - GFF4705 0.13 -0.3
69,053 - GFF4705 0.13 +2.4
69,130 + GFF4705 0.19 +0.0
69,158 - GFF4705 0.21 -0.3
69,307 + GFF4705 0.32 -0.5
69,308 - GFF4705 0.32 +0.7
69,403 + GFF4705 0.39 +0.3
69,403 + GFF4705 0.39 -0.3
69,404 - GFF4705 0.39 -0.4
69,493 + GFF4705 0.46 -0.2
69,530 - GFF4705 0.49 +1.2
69,530 - GFF4705 0.49 -0.3
69,530 - GFF4705 0.49 +0.4
69,532 + GFF4705 0.49 +0.7
69,532 + GFF4705 0.49 -1.3
69,532 + GFF4705 0.49 -0.8
69,533 - GFF4705 0.49 -1.2
69,533 - GFF4705 0.49 -0.2
69,533 - GFF4705 0.49 +2.1
69,547 + GFF4705 0.50 -0.3
69,547 + GFF4705 0.50 -0.3
69,547 + GFF4705 0.50 -0.6
69,548 - GFF4705 0.50 +0.4
69,548 - GFF4705 0.50 -1.9
69,548 - GFF4705 0.50 +0.4
69,548 - GFF4705 0.50 -0.2
69,548 - GFF4705 0.50 -0.2
69,548 - GFF4705 0.50 -0.1
69,548 - GFF4705 0.50 +0.5
69,682 + GFF4705 0.60 -0.3
69,682 + GFF4705 0.60 +0.0
69,683 - GFF4705 0.60 -1.6
69,683 - GFF4705 0.60 -1.5
69,683 - GFF4705 0.60 +0.3
69,691 + GFF4705 0.61 -0.5
69,691 + GFF4705 0.61 -1.3
69,691 + GFF4705 0.61 -0.3
69,691 + GFF4705 0.61 +0.0
69,691 + GFF4705 0.61 +0.1
69,691 + GFF4705 0.61 +1.1
69,691 + GFF4705 0.61 -1.5
69,692 - GFF4705 0.61 +1.5
69,692 - GFF4705 0.61 +1.1
69,692 - GFF4705 0.61 -0.8
69,692 - GFF4705 0.61 -1.8
69,692 - GFF4705 0.61 +0.1
69,692 - GFF4705 0.61 +0.7
69,692 - GFF4705 0.61 -0.5
69,692 - GFF4705 0.61 -0.6
69,692 - GFF4705 0.61 -0.3
69,820 + GFF4705 0.70 -0.4
69,821 - GFF4705 0.71 -0.7
69,821 - GFF4705 0.71 -0.7
69,821 - GFF4705 0.71 -1.8
69,847 + GFF4705 0.72 -0.0
69,847 + GFF4705 0.72 -0.9
69,847 + GFF4705 0.72 -0.6
69,847 + GFF4705 0.72 +0.5
69,859 + GFF4705 0.73 -0.7

Or see this region's nucleotide sequence