Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4669 and GFF4670 are separated by 89 nucleotides GFF4670 and GFF4671 overlap by 4 nucleotides GFF4671 and GFF4672 are separated by 47 nucleotides
GFF4669 - Pca operon transcriptional activator PcaQ, at 26,335 to 27,264
GFF4669
GFF4670 - Transcriptional regulator, AcrR family, at 27,354 to 27,959
GFF4670
GFF4671 - putative membrane protein, at 27,956 to 29,167
GFF4671
GFF4672 - Exoenzymes regulatory protein AepA precursor, at 29,215 to 30,900
GFF4672
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.292 kb on + strand at 27.319 kb on + strand at 27.319 kb on + strand at 27.505 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.661 kb on + strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.781 kb on + strand, within GFF4670 at 27.782 kb on - strand, within GFF4670 at 28.067 kb on + strand at 28.068 kb on - strand at 28.157 kb on + strand, within GFF4671 at 28.157 kb on + strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.294 kb on - strand, within GFF4671 at 28.301 kb on + strand, within GFF4671 at 28.302 kb on - strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.326 kb on - strand, within GFF4671 at 28.440 kb on - strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.830 kb on - strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.923 kb on - strand, within GFF4671 at 29.076 kb on - strand at 29.169 kb on - strand at 29.169 kb on - strand at 29.237 kb on + strand at 29.237 kb on + strand at 29.238 kb on - strand at 29.388 kb on - strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.772 kb on - strand, within GFF4672 at 29.841 kb on - strand, within GFF4672 at 30.015 kb on - strand, within GFF4672 at 30.050 kb on + strand, within GFF4672 at 30.051 kb on - strand, within GFF4672 at 30.081 kb on - strand, within GFF4672 at 30.122 kb on + strand, within GFF4672
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 27,292 + -0.2 27,319 + -0.3 27,319 + -1.0 27,505 - GFF4670 0.25 -0.6 27,571 - GFF4670 0.36 +1.2 27,571 - GFF4670 0.36 +0.7 27,661 + GFF4670 0.51 +1.1 27,661 - GFF4670 0.51 -0.9 27,661 - GFF4670 0.51 +1.7 27,661 - GFF4670 0.51 +0.7 27,781 + GFF4670 0.70 -0.2 27,782 - GFF4670 0.71 -0.3 28,067 + -0.9 28,068 - -0.8 28,157 + GFF4671 0.17 +1.7 28,157 + GFF4671 0.17 -0.3 28,158 - GFF4671 0.17 -1.2 28,158 - GFF4671 0.17 -0.0 28,158 - GFF4671 0.17 -0.9 28,185 - GFF4671 0.19 +0.1 28,185 - GFF4671 0.19 -0.8 28,294 - GFF4671 0.28 -0.2 28,301 + GFF4671 0.28 -1.4 28,302 - GFF4671 0.29 -0.2 28,325 + GFF4671 0.30 -0.6 28,325 + GFF4671 0.30 -0.4 28,325 + GFF4671 0.30 -0.8 28,326 - GFF4671 0.31 -0.2 28,440 - GFF4671 0.40 +0.3 28,829 + GFF4671 0.72 -0.5 28,829 + GFF4671 0.72 -1.4 28,829 + GFF4671 0.72 -1.1 28,830 - GFF4671 0.72 +0.5 28,922 + GFF4671 0.80 +0.3 28,922 + GFF4671 0.80 -1.3 28,922 + GFF4671 0.80 -2.9 28,923 - GFF4671 0.80 -0.6 29,076 - -0.7 29,169 - -0.4 29,169 - +0.5 29,237 + -1.0 29,237 + -0.3 29,238 - -1.0 29,388 - GFF4672 0.10 -0.1 29,588 + GFF4672 0.22 -0.1 29,588 + GFF4672 0.22 -2.4 29,588 + GFF4672 0.22 -0.0 29,589 - GFF4672 0.22 -0.4 29,589 - GFF4672 0.22 +0.7 29,589 - GFF4672 0.22 +0.5 29,772 - GFF4672 0.33 -0.1 29,841 - GFF4672 0.37 +0.3 30,015 - GFF4672 0.47 -0.7 30,050 + GFF4672 0.50 -0.2 30,051 - GFF4672 0.50 +0.7 30,081 - GFF4672 0.51 +0.0 30,122 + GFF4672 0.54 +0.8
Or see this region's nucleotide sequence