Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4657 and GFF4658 are separated by 1 nucleotides GFF4658 and GFF4659 are separated by 9 nucleotides GFF4659 and GFF4660 are separated by 0 nucleotides GFF4660 and GFF4661 overlap by 32 nucleotides
GFF4657 - hypothetical protein, at 16,045 to 17,043
GFF4657
GFF4658 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 17,045 to 17,557
GFF4658
GFF4659 - no description, at 17,567 to 17,686
GFF4659
GFF4660 - hypothetical protein, at 17,687 to 18,610
GFF4660
GFF4661 - no description, at 18,579 to 19,871
GFF4661
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.100 kb on + strand, within GFF4658 at 17.100 kb on + strand, within GFF4658 at 17.100 kb on + strand, within GFF4658 at 17.101 kb on - strand, within GFF4658 at 17.116 kb on + strand, within GFF4658 at 17.116 kb on + strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.257 kb on - strand, within GFF4658 at 17.257 kb on - strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.377 kb on - strand, within GFF4658 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.712 kb on + strand at 17.713 kb on - strand at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.563 kb on + strand at 18.563 kb on + strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.678 kb on + strand at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.055 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.304 kb on + strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,073 + -2.0 17,073 + +0.3 17,073 + +0.8 17,073 + -0.6 17,073 + -0.7 17,073 + +0.3 17,073 + +0.8 17,073 + -0.2 17,073 + -0.1 17,073 + -0.8 17,073 + -0.4 17,073 + +0.7 17,074 - +0.3 17,074 - -0.3 17,074 - -0.3 17,074 - +0.3 17,074 - +0.1 17,074 - -1.8 17,074 - -0.2 17,074 - -0.2 17,100 + GFF4658 0.11 -0.3 17,100 + GFF4658 0.11 +0.9 17,100 + GFF4658 0.11 -0.4 17,101 - GFF4658 0.11 -0.5 17,116 + GFF4658 0.14 -0.2 17,116 + GFF4658 0.14 +1.1 17,117 - GFF4658 0.14 +0.3 17,117 - GFF4658 0.14 -0.0 17,117 - GFF4658 0.14 -0.8 17,117 - GFF4658 0.14 +0.1 17,117 - GFF4658 0.14 -0.0 17,256 + GFF4658 0.41 +1.7 17,256 + GFF4658 0.41 +0.5 17,256 + GFF4658 0.41 +0.2 17,256 + GFF4658 0.41 -0.4 17,257 - GFF4658 0.41 +0.4 17,257 - GFF4658 0.41 -1.5 17,346 + GFF4658 0.59 -1.3 17,346 + GFF4658 0.59 -1.7 17,346 + GFF4658 0.59 -0.5 17,347 - GFF4658 0.59 -1.2 17,347 - GFF4658 0.59 -1.2 17,347 - GFF4658 0.59 +1.0 17,347 - GFF4658 0.59 +0.3 17,347 - GFF4658 0.59 -0.7 17,377 - GFF4658 0.65 +0.3 17,649 + GFF4659 0.68 -0.5 17,649 + GFF4659 0.68 -0.2 17,649 + GFF4659 0.68 -0.3 17,649 + GFF4659 0.68 -0.3 17,649 + GFF4659 0.68 -0.6 17,650 - GFF4659 0.69 -0.5 17,650 - GFF4659 0.69 -0.4 17,650 - GFF4659 0.69 +0.4 17,650 - GFF4659 0.69 +0.3 17,712 + -0.6 17,713 - -1.5 17,900 + GFF4660 0.23 -0.5 17,900 + GFF4660 0.23 +0.3 17,900 + GFF4660 0.23 +0.1 17,901 - GFF4660 0.23 +0.8 17,901 - GFF4660 0.23 -0.0 17,901 - GFF4660 0.23 -0.5 17,961 + GFF4660 0.30 -0.8 17,961 + GFF4660 0.30 -0.3 17,961 + GFF4660 0.30 -1.3 17,961 + GFF4660 0.30 -0.3 17,961 + GFF4660 0.30 -0.9 17,961 + GFF4660 0.30 -0.9 17,961 + GFF4660 0.30 +0.3 17,961 + GFF4660 0.30 -0.2 17,962 - GFF4660 0.30 -0.3 17,962 - GFF4660 0.30 +0.4 17,962 - GFF4660 0.30 -0.8 17,962 - GFF4660 0.30 -0.6 17,962 - GFF4660 0.30 -0.2 17,962 - GFF4660 0.30 -0.4 17,962 - GFF4660 0.30 -0.3 18,002 + GFF4660 0.34 -0.1 18,002 + GFF4660 0.34 -1.9 18,002 + GFF4660 0.34 -1.8 18,003 - GFF4660 0.34 -1.8 18,003 - GFF4660 0.34 +0.2 18,003 - GFF4660 0.34 +1.1 18,003 - GFF4660 0.34 -0.7 18,003 - GFF4660 0.34 -0.3 18,003 - GFF4660 0.34 -0.9 18,320 + GFF4660 0.69 +1.7 18,320 + GFF4660 0.69 -0.5 18,320 + GFF4660 0.69 -0.4 18,320 + GFF4660 0.69 +0.3 18,321 - GFF4660 0.69 -0.4 18,321 - GFF4660 0.69 +0.7 18,321 - GFF4660 0.69 -0.1 18,321 - GFF4660 0.69 -0.2 18,321 - GFF4660 0.69 -0.9 18,350 + GFF4660 0.72 -0.8 18,350 + GFF4660 0.72 +0.3 18,350 + GFF4660 0.72 -1.0 18,351 - GFF4660 0.72 -1.2 18,351 - GFF4660 0.72 -0.6 18,563 + -1.0 18,563 + -1.0 18,564 - -0.7 18,564 - +0.1 18,564 - -0.5 18,564 - -0.6 18,564 - -0.6 18,564 - +0.2 18,564 - -1.1 18,564 - +0.4 18,564 - -0.7 18,564 - -0.6 18,564 - -0.2 18,678 + -0.5 18,975 + GFF4661 0.31 +0.7 18,975 + GFF4661 0.31 +0.8 18,975 + GFF4661 0.31 -0.3 18,975 + GFF4661 0.31 -0.0 18,975 + GFF4661 0.31 -0.6 18,976 - GFF4661 0.31 -0.7 18,976 - GFF4661 0.31 -0.6 18,976 - GFF4661 0.31 -0.8 18,976 - GFF4661 0.31 +0.4 18,976 - GFF4661 0.31 +0.2 19,009 + GFF4661 0.33 -0.5 19,009 + GFF4661 0.33 -0.3 19,009 + GFF4661 0.33 -0.6 19,009 + GFF4661 0.33 +2.2 19,009 + GFF4661 0.33 +0.1 19,010 - GFF4661 0.33 +0.3 19,010 - GFF4661 0.33 +0.1 19,010 - GFF4661 0.33 +0.9 19,055 + GFF4661 0.37 -0.4 19,138 + GFF4661 0.43 +0.0 19,138 + GFF4661 0.43 +0.2 19,138 + GFF4661 0.43 -0.4 19,138 + GFF4661 0.43 +0.7 19,139 - GFF4661 0.43 -0.3 19,139 - GFF4661 0.43 -0.3 19,139 - GFF4661 0.43 -0.5 19,139 - GFF4661 0.43 +0.1 19,139 - GFF4661 0.43 -0.2 19,153 + GFF4661 0.44 +0.4 19,153 + GFF4661 0.44 -1.2 19,153 + GFF4661 0.44 -0.2 19,154 - GFF4661 0.44 +0.3 19,154 - GFF4661 0.44 -0.2 19,164 + GFF4661 0.45 +0.2 19,164 + GFF4661 0.45 +0.8 19,164 + GFF4661 0.45 +0.4 19,164 + GFF4661 0.45 +0.2 19,165 - GFF4661 0.45 -0.3 19,165 - GFF4661 0.45 -0.3 19,165 - GFF4661 0.45 +0.5 19,304 + GFF4661 0.56 -1.3 19,305 - GFF4661 0.56 +0.7 19,305 - GFF4661 0.56 -0.9 19,305 - GFF4661 0.56 -0.9 19,325 - GFF4661 0.58 -0.3 19,325 - GFF4661 0.58 +0.6 19,325 - GFF4661 0.58 +0.2 19,470 + GFF4661 0.69 -0.7 19,470 + GFF4661 0.69 -0.8 19,470 + GFF4661 0.69 +0.4 19,470 + GFF4661 0.69 -0.3 19,471 - GFF4661 0.69 -0.8 19,471 - GFF4661 0.69 +0.5 19,471 - GFF4661 0.69 +0.3 19,471 - GFF4661 0.69 +1.4 19,506 + GFF4661 0.72 -0.8 19,506 + GFF4661 0.72 +0.5 19,506 + GFF4661 0.72 -0.2 19,506 + GFF4661 0.72 -0.5
Or see this region's nucleotide sequence