Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4619 and GFF4620 are separated by 26 nucleotides GFF4620 and GFF4621 are separated by 3 nucleotides GFF4621 and GFF4622 are separated by 17 nucleotides
GFF4619 - Altronate dehydratase (EC 4.2.1.7), at 260,520 to 262,058
GFF4619
GFF4620 - Gluconolactonase (EC 3.1.1.17), at 262,085 to 263,017
GFF4620
GFF4621 - Hydroxycarboxylate dehydrogenase (NADP+) HcxB, at 263,021 to 264,076
GFF4621
GFF4622 - Permease of the drug/metabolite transporter (DMT) superfamily, at 264,094 to 264,915
GFF4622
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 262.056 kb on + strand at 262.056 kb on + strand at 262.056 kb on + strand at 262.056 kb on + strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.342 kb on + strand, within GFF4620 at 262.343 kb on - strand, within GFF4620 at 262.343 kb on - strand, within GFF4620 at 262.520 kb on + strand, within GFF4620 at 262.539 kb on - strand, within GFF4620 at 262.583 kb on + strand, within GFF4620 at 262.611 kb on + strand, within GFF4620 at 262.611 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.680 kb on - strand, within GFF4620 at 262.680 kb on - strand, within GFF4620 at 262.871 kb on + strand, within GFF4620 at 262.872 kb on - strand, within GFF4620 at 262.872 kb on - strand, within GFF4620 at 262.985 kb on + strand at 262.986 kb on - strand at 262.986 kb on - strand at 262.986 kb on - strand at 263.180 kb on + strand, within GFF4621 at 263.181 kb on - strand, within GFF4621 at 263.183 kb on - strand, within GFF4621 at 263.320 kb on - strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.627 kb on + strand, within GFF4621 at 263.789 kb on - strand, within GFF4621 at 263.849 kb on - strand, within GFF4621 at 264.075 kb on - strand at 264.095 kb on + strand at 264.096 kb on - strand at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.470 kb on + strand, within GFF4622 at 264.470 kb on + strand, within GFF4622 at 264.551 kb on + strand, within GFF4622 at 264.552 kb on - strand, within GFF4622 at 264.699 kb on - strand, within GFF4622 at 264.722 kb on + strand, within GFF4622 at 264.723 kb on - strand, within GFF4622 at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 265.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 262,056 + +0.4 262,056 + -0.2 262,056 + -0.3 262,056 + +0.0 262,057 - -0.6 262,057 - -0.2 262,057 - -1.1 262,057 - -0.3 262,057 - -0.2 262,057 - +0.1 262,057 - +1.5 262,057 - -0.8 262,057 - -0.5 262,057 - +0.2 262,342 + GFF4620 0.28 -0.9 262,343 - GFF4620 0.28 +0.6 262,343 - GFF4620 0.28 -1.4 262,520 + GFF4620 0.47 +1.3 262,539 - GFF4620 0.49 -0.2 262,583 + GFF4620 0.53 -0.7 262,611 + GFF4620 0.56 +0.2 262,611 + GFF4620 0.56 +0.5 262,679 + GFF4620 0.64 +2.8 262,679 + GFF4620 0.64 +0.6 262,679 + GFF4620 0.64 +0.6 262,679 + GFF4620 0.64 +0.3 262,679 + GFF4620 0.64 -0.6 262,680 - GFF4620 0.64 +0.0 262,680 - GFF4620 0.64 +1.0 262,871 + GFF4620 0.84 +0.2 262,872 - GFF4620 0.84 -0.2 262,872 - GFF4620 0.84 -1.0 262,985 + -0.6 262,986 - -0.4 262,986 - +0.2 262,986 - -0.0 263,180 + GFF4621 0.15 -0.6 263,181 - GFF4621 0.15 -0.5 263,183 - GFF4621 0.15 +0.3 263,320 - GFF4621 0.28 +2.8 263,555 + GFF4621 0.51 +0.2 263,555 + GFF4621 0.51 -0.5 263,555 + GFF4621 0.51 -0.3 263,556 - GFF4621 0.51 +2.8 263,556 - GFF4621 0.51 +0.3 263,556 - GFF4621 0.51 -1.0 263,627 + GFF4621 0.57 +0.8 263,789 - GFF4621 0.73 -1.4 263,849 - GFF4621 0.78 +0.2 264,075 - -0.3 264,095 + -0.1 264,096 - +0.6 264,377 - GFF4622 0.34 +0.5 264,377 - GFF4622 0.34 +0.8 264,377 - GFF4622 0.34 -0.6 264,377 - GFF4622 0.34 -0.6 264,470 + GFF4622 0.46 -1.0 264,470 + GFF4622 0.46 -2.4 264,551 + GFF4622 0.56 +2.4 264,552 - GFF4622 0.56 -0.5 264,699 - GFF4622 0.74 +0.5 264,722 + GFF4622 0.76 -1.1 264,723 - GFF4622 0.77 +0.4 264,924 + -0.5 264,924 + -1.0 264,924 + -0.2 264,924 + -1.0 264,924 + +0.3 264,924 + -0.8 264,925 - -1.4 264,925 - -0.2 264,925 - -0.3 264,925 - +1.0 264,925 - +0.8 264,925 - +1.8 264,925 - -0.4 264,925 - -0.6 264,925 - +0.2 265,067 + -0.2
Or see this region's nucleotide sequence