Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4580 and GFF4581 overlap by 23 nucleotides GFF4581 and GFF4582 are separated by 352 nucleotides GFF4582 and GFF4583 overlap by 4 nucleotides
GFF4580 - hypothetical protein, at 220,848 to 222,875
GFF4580
GFF4581 - hypothetical protein, at 222,853 to 223,146
GFF4581
GFF4582 - TRAP-type C4-dicarboxylate transport system, small permease component, at 223,499 to 224,098
GFF4582
GFF4583 - TRAP-type C4-dicarboxylate transport system, large permease component, at 224,095 to 225,393
GFF4583
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1 at 222.628 kb on + strand, within GFF4580 at 222.628 kb on + strand, within GFF4580 at 222.629 kb on - strand, within GFF4580 at 222.675 kb on + strand at 222.682 kb on + strand at 222.683 kb on - strand at 222.683 kb on - strand at 222.687 kb on - strand at 222.790 kb on - strand at 222.790 kb on - strand at 222.860 kb on + strand at 222.860 kb on + strand at 222.861 kb on - strand at 222.861 kb on - strand at 222.910 kb on + strand, within GFF4581 at 222.911 kb on - strand, within GFF4581 at 223.040 kb on - strand, within GFF4581 at 223.040 kb on - strand, within GFF4581 at 223.041 kb on + strand, within GFF4581 at 223.042 kb on - strand, within GFF4581 at 223.042 kb on - strand, within GFF4581 at 223.127 kb on - strand at 223.135 kb on + strand at 223.135 kb on + strand at 223.135 kb on + strand at 223.368 kb on + strand at 223.384 kb on - strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.437 kb on + strand at 223.489 kb on - strand at 223.593 kb on + strand, within GFF4582 at 223.594 kb on - strand, within GFF4582 at 223.594 kb on - strand, within GFF4582 at 223.670 kb on + strand, within GFF4582 at 223.787 kb on + strand, within GFF4582 at 223.787 kb on + strand, within GFF4582 at 223.955 kb on + strand, within GFF4582 at 224.004 kb on + strand, within GFF4582 at 224.005 kb on - strand, within GFF4582 at 224.005 kb on - strand, within GFF4582 at 224.040 kb on - strand at 224.267 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.981 kb on - strand, within GFF4583 at 225.049 kb on + strand, within GFF4583
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 222,628 + GFF4580 0.88 -0.2 222,628 + GFF4580 0.88 -0.2 222,629 - GFF4580 0.88 -0.2 222,675 + +0.2 222,682 + -1.2 222,683 - -2.2 222,683 - +0.0 222,687 - -0.2 222,790 - +0.3 222,790 - +0.0 222,860 + -1.1 222,860 + -0.5 222,861 - +0.4 222,861 - -0.0 222,910 + GFF4581 0.19 -1.2 222,911 - GFF4581 0.20 -0.1 223,040 - GFF4581 0.64 -1.3 223,040 - GFF4581 0.64 +1.6 223,041 + GFF4581 0.64 -0.5 223,042 - GFF4581 0.64 -0.2 223,042 - GFF4581 0.64 -0.2 223,127 - -0.5 223,135 + -1.2 223,135 + -0.1 223,135 + -0.2 223,368 + -0.5 223,384 - +0.6 223,406 + +0.1 223,406 + +0.3 223,406 + -0.6 223,406 + +1.4 223,406 + -0.4 223,406 + +0.4 223,406 + +0.2 223,406 + -0.9 223,407 - -0.6 223,407 - +0.3 223,407 - +0.4 223,407 - +0.2 223,407 - -0.0 223,437 + -0.2 223,489 - -0.4 223,593 + GFF4582 0.16 -1.1 223,594 - GFF4582 0.16 -0.7 223,594 - GFF4582 0.16 -1.6 223,670 + GFF4582 0.28 -1.5 223,787 + GFF4582 0.48 -1.0 223,787 + GFF4582 0.48 +0.1 223,955 + GFF4582 0.76 -0.8 224,004 + GFF4582 0.84 +0.8 224,005 - GFF4582 0.84 -0.3 224,005 - GFF4582 0.84 -1.0 224,040 - -0.2 224,267 - GFF4583 0.13 -0.9 224,852 - GFF4583 0.58 -0.3 224,852 - GFF4583 0.58 -0.4 224,852 - GFF4583 0.58 -1.6 224,852 - GFF4583 0.58 -0.4 224,981 - GFF4583 0.68 +0.2 225,049 + GFF4583 0.73 -0.9
Or see this region's nucleotide sequence