Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4557 and GFF4558 overlap by 4 nucleotides GFF4558 and GFF4559 are separated by 3 nucleotides GFF4559 and GFF4560 are separated by 97 nucleotides GFF4560 and GFF4561 are separated by 108 nucleotides
GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654
GFF4557
GFF4558 - RNA polymerase ECF-type sigma factor, at 194,651 to 195,193
GFF4558
GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406
GFF4559
GFF4560 - hypothetical protein, at 195,504 to 196,235
GFF4560
GFF4561 - Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27), at 196,344 to 197,867
GFF4561
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 194.688 kb on + strand at 194.689 kb on - strand at 194.814 kb on + strand, within GFF4558 at 194.814 kb on + strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 195.030 kb on + strand, within GFF4558 at 195.088 kb on - strand, within GFF4558 at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.701 kb on - strand, within GFF4560 at 196.130 kb on - strand, within GFF4560 at 196.256 kb on - strand at 196.285 kb on + strand at 196.286 kb on - strand at 196.286 kb on - strand at 196.325 kb on + strand at 196.325 kb on + strand at 196.326 kb on - strand at 196.326 kb on - strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.359 kb on + strand at 196.359 kb on + strand at 196.360 kb on - strand at 196.360 kb on - strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.469 kb on - strand at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.158 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 194,688 + -0.4 194,689 - -0.8 194,814 + GFF4558 0.30 -0.8 194,814 + GFF4558 0.30 +2.2 194,815 - GFF4558 0.30 +1.0 194,815 - GFF4558 0.30 -0.2 194,815 - GFF4558 0.30 -0.8 194,815 - GFF4558 0.30 -0.9 194,815 - GFF4558 0.30 -0.1 195,030 + GFF4558 0.70 -1.4 195,088 - GFF4558 0.80 -0.4 195,399 + -0.2 195,399 + -0.2 195,399 + +0.8 195,399 + -0.3 195,399 + +0.2 195,399 + +1.0 195,399 + -1.4 195,399 + -0.2 195,399 + -0.3 195,399 + -0.3 195,399 + +0.3 195,399 + -0.2 195,399 + +1.2 195,399 + -0.6 195,399 + +0.2 195,400 - -0.1 195,400 - -0.5 195,400 - -0.9 195,400 - -0.1 195,505 + -1.1 195,505 + +0.0 195,505 + -1.0 195,505 + -0.7 195,505 + +0.2 195,506 - +0.2 195,506 - -0.5 195,506 - +0.4 195,506 - -0.1 195,506 - -0.8 195,506 - -0.9 195,701 - GFF4560 0.27 +0.7 196,130 - GFF4560 0.86 +0.7 196,256 - -0.2 196,285 + -0.1 196,286 - -0.4 196,286 - -0.2 196,325 + +0.6 196,325 + -2.6 196,326 - -1.7 196,326 - -0.3 196,341 + -0.0 196,341 + -0.3 196,341 + -0.2 196,342 - -0.3 196,342 - +0.3 196,342 - +3.4 196,359 + +0.1 196,359 + -1.5 196,360 - +0.1 196,360 - -0.2 196,383 + -1.3 196,383 + +0.1 196,383 + +1.2 196,383 + +0.6 196,383 + -0.5 196,383 + -0.2 196,383 + -0.2 196,384 - -0.2 196,384 - -0.1 196,384 - +0.2 196,384 - +0.2 196,384 - -0.0 196,384 - +0.2 196,469 - +0.5 196,744 + GFF4561 0.26 -0.5 196,744 + GFF4561 0.26 +0.2 196,744 + GFF4561 0.26 -0.9 196,744 + GFF4561 0.26 +0.2 196,744 + GFF4561 0.26 +0.2 196,745 - GFF4561 0.26 +0.8 196,745 - GFF4561 0.26 -1.1 196,745 - GFF4561 0.26 +0.8 196,745 - GFF4561 0.26 +0.3 196,745 - GFF4561 0.26 -1.0 196,745 - GFF4561 0.26 -1.4 196,774 + GFF4561 0.28 -0.8 196,774 + GFF4561 0.28 -0.6 196,775 - GFF4561 0.28 +0.3 196,775 - GFF4561 0.28 -1.2 196,775 - GFF4561 0.28 +0.1 197,053 - GFF4561 0.47 -2.0 197,053 - GFF4561 0.47 -0.4 197,053 - GFF4561 0.47 -0.0 197,158 + GFF4561 0.53 -0.4 197,224 + GFF4561 0.58 -0.4 197,224 + GFF4561 0.58 -0.1 197,224 + GFF4561 0.58 +0.1 197,224 + GFF4561 0.58 -0.9 197,224 + GFF4561 0.58 +0.2 197,225 - GFF4561 0.58 +0.1 197,225 - GFF4561 0.58 +0.1 197,227 + GFF4561 0.58 +0.1 197,227 + GFF4561 0.58 -0.1 197,227 + GFF4561 0.58 -0.9 197,227 + GFF4561 0.58 +0.2 197,227 + GFF4561 0.58 +0.4 197,228 - GFF4561 0.58 -1.2 197,228 - GFF4561 0.58 +0.1 197,228 - GFF4561 0.58 -0.4 197,228 - GFF4561 0.58 +1.2
Or see this region's nucleotide sequence