Strain Fitness in Variovorax sp. SCN45 around GFF4556

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4554 and GFF4555 are separated by 103 nucleotidesGFF4555 and GFF4556 overlap by 4 nucleotidesGFF4556 and GFF4557 overlap by 4 nucleotides GFF4554 - Protease HtpX, at 191,095 to 191,970 GFF4554 GFF4555 - Putative transmembrane protein, at 192,074 to 192,829 GFF4555 GFF4556 - hypothetical protein, at 192,826 to 193,626 GFF4556 GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654 GFF4557 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 191.961 kb on + strandat 191.961 kb on + strandat 191.961 kb on + strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.006 kb on - strandat 192.006 kb on - strandat 192.006 kb on - strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.075 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.129 kb on + strandat 192.129 kb on + strandat 192.129 kb on + strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.651 kb on + strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.532 kb on + strand, within GFF4556at 193.533 kb on - strand, within GFF4556at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.858 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.108 kb on - strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.353 kb on + strand, within GFF4557

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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191,961 + -0.8
191,961 + -0.5
191,961 + -0.5
191,962 - -0.6
191,962 - -0.8
191,962 - -2.4
191,962 - -0.6
191,962 - -0.1
192,005 + -0.9
192,005 + -1.2
192,005 + -0.8
192,006 - +0.1
192,006 - -0.1
192,006 - +0.4
192,060 + -0.6
192,060 + +1.8
192,060 + -0.2
192,060 + +0.1
192,060 + -0.3
192,060 + +0.4
192,061 - +0.0
192,061 - +0.3
192,061 - +0.2
192,061 - -0.2
192,061 - -0.1
192,061 - -1.4
192,061 - -0.3
192,061 - +0.8
192,066 + +1.8
192,066 + +0.2
192,066 + -0.8
192,066 + +0.4
192,067 - +0.2
192,067 - +0.0
192,067 - +0.5
192,067 - +0.4
192,067 - -0.2
192,067 - +1.2
192,075 + -0.2
192,086 + -0.3
192,086 + -0.1
192,087 - -1.9
192,087 - +0.7
192,129 + -0.3
192,129 + +1.4
192,129 + -1.2
192,130 - +0.7
192,130 - -0.4
192,130 - +0.8
192,651 + GFF4555 0.76 -0.1
192,652 - GFF4555 0.76 -0.3
192,652 - GFF4555 0.76 +0.0
192,652 - GFF4555 0.76 -1.5
192,695 + GFF4555 0.82 -1.2
192,695 + GFF4555 0.82 +0.3
192,696 - GFF4555 0.82 -0.0
192,696 - GFF4555 0.82 -0.2
192,696 - GFF4555 0.82 -1.0
192,696 - GFF4555 0.82 -1.5
193,232 + GFF4556 0.51 +0.5
193,232 + GFF4556 0.51 +0.8
193,232 + GFF4556 0.51 -0.1
193,232 + GFF4556 0.51 +0.3
193,232 + GFF4556 0.51 +0.0
193,232 + GFF4556 0.51 -0.2
193,232 + GFF4556 0.51 +0.2
193,233 - GFF4556 0.51 +1.8
193,233 - GFF4556 0.51 -0.5
193,233 - GFF4556 0.51 -0.1
193,233 - GFF4556 0.51 -0.9
193,233 - GFF4556 0.51 -0.2
193,233 - GFF4556 0.51 +1.2
193,233 - GFF4556 0.51 -0.5
193,233 - GFF4556 0.51 -0.5
193,233 - GFF4556 0.51 -0.8
193,505 + GFF4556 0.85 +0.1
193,505 + GFF4556 0.85 +0.9
193,505 + GFF4556 0.85 +0.2
193,506 - GFF4556 0.85 -1.1
193,506 - GFF4556 0.85 +0.3
193,506 - GFF4556 0.85 +0.7
193,506 - GFF4556 0.85 +0.6
193,506 - GFF4556 0.85 +0.7
193,506 - GFF4556 0.85 +0.3
193,532 + GFF4556 0.88 +1.8
193,533 - GFF4556 0.88 -0.1
193,756 + GFF4557 0.13 +0.8
193,756 + GFF4557 0.13 -0.8
193,756 + GFF4557 0.13 -0.5
193,756 + GFF4557 0.13 +0.8
193,757 - GFF4557 0.13 +0.0
193,757 - GFF4557 0.13 -1.9
193,858 + GFF4557 0.23 -0.2
194,005 + GFF4557 0.37 -0.2
194,005 + GFF4557 0.37 +0.0
194,005 + GFF4557 0.37 +0.5
194,006 - GFF4557 0.37 -0.2
194,006 - GFF4557 0.37 -0.2
194,006 - GFF4557 0.37 -0.5
194,006 - GFF4557 0.37 +0.8
194,008 + GFF4557 0.37 -1.0
194,008 + GFF4557 0.37 -0.8
194,009 - GFF4557 0.37 -0.5
194,009 - GFF4557 0.37 +0.0
194,009 - GFF4557 0.37 -1.5
194,009 - GFF4557 0.37 -0.5
194,050 + GFF4557 0.41 +0.2
194,050 + GFF4557 0.41 +0.2
194,050 + GFF4557 0.41 +0.5
194,050 + GFF4557 0.41 +2.2
194,051 - GFF4557 0.41 -2.2
194,051 - GFF4557 0.41 -0.2
194,051 - GFF4557 0.41 -1.3
194,107 + GFF4557 0.47 -1.2
194,107 + GFF4557 0.47 -1.4
194,107 + GFF4557 0.47 -0.4
194,108 - GFF4557 0.47 +2.8
194,296 + GFF4557 0.65 -0.2
194,296 + GFF4557 0.65 +1.8
194,296 + GFF4557 0.65 +0.4
194,296 + GFF4557 0.65 -0.4
194,296 + GFF4557 0.65 +1.2
194,297 - GFF4557 0.65 +0.2
194,297 - GFF4557 0.65 -1.2
194,297 - GFF4557 0.65 -2.2
194,297 - GFF4557 0.65 -1.5
194,297 - GFF4557 0.65 -0.5
194,297 - GFF4557 0.65 -0.5
194,297 - GFF4557 0.65 +1.4
194,297 - GFF4557 0.65 -1.9
194,353 + GFF4557 0.71 -1.4

Or see this region's nucleotide sequence