Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4530 and GFF4531 overlap by 4 nucleotides GFF4531 and GFF4532 are separated by 140 nucleotides GFF4532 and GFF4533 overlap by 11 nucleotides
GFF4530 - MBL-fold metallo-hydrolase superfamily, at 168,149 to 169,825
GFF4530
GFF4531 - Pseudouridine synthase, at 169,822 to 170,547
GFF4531
GFF4532 - hypothetical protein, at 170,688 to 171,233
GFF4532
GFF4533 - Multidrug resistance transporter, Bcr/CflA family, at 171,223 to 172,452
GFF4533
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2
3 at 169.733 kb on + strand at 169.827 kb on + strand at 169.827 kb on + strand at 169.828 kb on - strand at 169.828 kb on - strand at 169.828 kb on - strand at 169.925 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.057 kb on - strand, within GFF4531 at 170.216 kb on - strand, within GFF4531 at 170.216 kb on - strand, within GFF4531 at 170.521 kb on + strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.758 kb on - strand, within GFF4532 at 170.758 kb on - strand, within GFF4532 at 171.106 kb on - strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.148 kb on - strand, within GFF4532 at 171.405 kb on - strand, within GFF4533 at 171.683 kb on + strand, within GFF4533 at 171.683 kb on + strand, within GFF4533 at 171.683 kb on + strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.684 kb on - strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.755 kb on + strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.756 kb on - strand, within GFF4533 at 171.827 kb on + strand, within GFF4533 at 171.827 kb on + strand, within GFF4533 at 171.828 kb on - strand, within GFF4533 at 171.935 kb on + strand, within GFF4533 at 171.935 kb on + strand, within GFF4533 at 171.936 kb on - strand, within GFF4533 at 171.936 kb on - strand, within GFF4533 at 171.936 kb on - strand, within GFF4533 at 171.936 kb on - strand, within GFF4533 at 171.936 kb on - strand, within GFF4533 at 172.184 kb on + strand, within GFF4533 at 172.184 kb on + strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533 at 172.185 kb on - strand, within GFF4533
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 169,733 + +0.1 169,827 + +0.1 169,827 + -0.2 169,828 - -0.2 169,828 - -0.3 169,828 - -0.8 169,925 + GFF4531 0.14 +1.6 170,056 + GFF4531 0.32 -0.3 170,056 + GFF4531 0.32 -1.3 170,056 + GFF4531 0.32 -0.9 170,056 + GFF4531 0.32 -0.1 170,056 + GFF4531 0.32 +0.0 170,056 + GFF4531 0.32 -0.4 170,057 - GFF4531 0.32 +0.9 170,216 - GFF4531 0.54 -0.8 170,216 - GFF4531 0.54 -0.7 170,521 + -0.1 170,522 - +0.6 170,522 - +0.8 170,522 - +0.3 170,522 - +0.7 170,757 + GFF4532 0.13 -0.9 170,757 + GFF4532 0.13 -0.7 170,757 + GFF4532 0.13 -0.7 170,757 + GFF4532 0.13 +0.1 170,757 + GFF4532 0.13 -0.8 170,757 + GFF4532 0.13 -0.4 170,758 - GFF4532 0.13 +0.3 170,758 - GFF4532 0.13 -0.2 171,106 - GFF4532 0.77 -0.4 171,147 + GFF4532 0.84 -1.3 171,147 + GFF4532 0.84 -0.3 171,147 + GFF4532 0.84 -0.3 171,147 + GFF4532 0.84 -1.4 171,148 - GFF4532 0.84 -1.2 171,405 - GFF4533 0.15 -0.2 171,683 + GFF4533 0.37 +1.1 171,683 + GFF4533 0.37 -0.4 171,683 + GFF4533 0.37 +2.8 171,684 - GFF4533 0.37 +0.2 171,684 - GFF4533 0.37 +0.9 171,684 - GFF4533 0.37 -0.5 171,684 - GFF4533 0.37 -0.9 171,684 - GFF4533 0.37 -0.6 171,684 - GFF4533 0.37 +0.7 171,755 + GFF4533 0.43 -1.0 171,755 + GFF4533 0.43 -0.6 171,755 + GFF4533 0.43 +0.6 171,755 + GFF4533 0.43 -0.8 171,755 + GFF4533 0.43 -0.9 171,755 + GFF4533 0.43 -0.2 171,755 + GFF4533 0.43 -0.2 171,755 + GFF4533 0.43 +0.2 171,756 - GFF4533 0.43 -0.0 171,756 - GFF4533 0.43 -0.9 171,756 - GFF4533 0.43 -0.3 171,756 - GFF4533 0.43 +0.6 171,756 - GFF4533 0.43 -0.0 171,756 - GFF4533 0.43 -0.5 171,756 - GFF4533 0.43 +0.5 171,756 - GFF4533 0.43 -0.1 171,827 + GFF4533 0.49 -1.0 171,827 + GFF4533 0.49 -0.4 171,828 - GFF4533 0.49 +1.3 171,935 + GFF4533 0.58 -0.6 171,935 + GFF4533 0.58 -0.4 171,936 - GFF4533 0.58 -0.0 171,936 - GFF4533 0.58 -1.2 171,936 - GFF4533 0.58 +0.2 171,936 - GFF4533 0.58 -0.3 171,936 - GFF4533 0.58 -0.1 172,184 + GFF4533 0.78 -0.1 172,184 + GFF4533 0.78 +0.1 172,185 - GFF4533 0.78 -0.1 172,185 - GFF4533 0.78 -0.5 172,185 - GFF4533 0.78 -0.3 172,185 - GFF4533 0.78 -0.3 172,185 - GFF4533 0.78 -0.1 172,185 - GFF4533 0.78 +1.8 172,185 - GFF4533 0.78 -1.2 172,185 - GFF4533 0.78 -1.6
Or see this region's nucleotide sequence