Strain Fitness in Variovorax sp. SCN45 around GFF4379

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
9,719	+		GFF4378	0.40	-0.1
9,719	+		GFF4378	0.40	-0.7
9,719	+		GFF4378	0.40	-1.5
9,720	-		GFF4378	0.41	-0.4
9,720	-		GFF4378	0.41	+0.2
9,720	-		GFF4378	0.41	-0.7
9,720	-		GFF4378	0.41	+0.5
9,776	+		GFF4378	0.61	-0.0
9,885	-				-0.3
9,885	-				-0.2
10,114	-				+0.5
10,114	-				-0.4
10,179	+				-0.6
10,179	+				+0.0
10,179	+				-0.7
10,179	+				-0.5
10,179	+				-0.8
10,179	+				+1.4
10,179	+				-0.4
10,180	-				-0.7
10,180	-				+0.4
10,180	-				-0.8
10,224	+				-1.5
10,224	+				-0.6
10,224	+				-0.5
10,225	-				-1.4
10,225	-				-0.2
10,225	-				-0.3
10,486	+				-0.3
10,487	-				+0.0
10,644	+				+0.2
10,644	+				-0.4
10,645	-				-0.2
10,645	-				+0.8
10,645	-				-0.7
10,645	-				+0.7
10,834	+		GFF4379	0.62	+0.6
10,834	+		GFF4379	0.62	+1.1
10,834	+		GFF4379	0.62	+0.2
10,834	+		GFF4379	0.62	-1.0
10,834	+		GFF4379	0.62	+0.1
10,834	+		GFF4379	0.62	-0.4
10,834	+		GFF4379	0.62	-0.9
10,834	+		GFF4379	0.62	-0.7
10,834	+		GFF4379	0.62	+0.2
10,834	+		GFF4379	0.62	-0.5
10,834	+		GFF4379	0.62	-0.1
10,834	+		GFF4379	0.62	-2.4
10,834	+		GFF4379	0.62	-1.4
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	+0.2
10,834	+		GFF4379	0.62	+1.8
10,834	+		GFF4379	0.62	+0.0
10,834	+		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	-0.2
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	+0.1
10,835	-		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	-0.1
10,835	-		GFF4379	0.62	-0.2
10,835	-		GFF4379	0.62	-0.3
10,835	-		GFF4379	0.62	+0.1
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	-2.0
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	+0.1
10,835	-		GFF4379	0.62	-1.4
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	+0.0
10,835	-		GFF4379	0.62	+0.3
10,835	-		GFF4379	0.62	-0.3
10,879	+		GFF4379	0.76	-0.6
10,879	+		GFF4379	0.76	-0.0
10,879	+		GFF4379	0.76	+1.2
10,879	+		GFF4379	0.76	-0.2
10,879	+		GFF4379	0.76	+0.1
10,879	+		GFF4379	0.76	+1.8
10,879	+		GFF4379	0.76	-0.2
10,879	+		GFF4379	0.76	-0.2
10,880	-		GFF4379	0.77	-1.0
10,880	-		GFF4379	0.77	+0.2
10,880	-		GFF4379	0.77	-1.1
10,880	-		GFF4379	0.77	-0.4
10,880	-		GFF4379	0.77	-1.9
10,908	+		GFF4379	0.85	-0.3
10,908	+		GFF4379	0.85	+0.1
10,908	+		GFF4379	0.85	+0.2
10,908	+		GFF4379	0.85	-0.2
10,909	-		GFF4379	0.86	-0.8
11,026	-				-0.8
11,026	-				-1.0
11,026	-				-0.6
11,026	-				+0.3
11,115	+		GFF4380	0.33	-1.3
11,115	+		GFF4380	0.33	-0.2
11,115	+		GFF4380	0.33	-0.9
11,144	+		GFF4380	0.43	+1.1
11,144	+		GFF4380	0.43	+1.1
11,144	+		GFF4380	0.43	-1.2
11,144	+		GFF4380	0.43	-1.4
11,144	+		GFF4380	0.43	+0.0
11,144	+		GFF4380	0.43	-2.3
11,144	+		GFF4380	0.43	+0.0
11,144	+		GFF4380	0.43	-0.1
11,144	+		GFF4380	0.43	-0.6
11,144	+		GFF4380	0.43	-0.8
11,144	+		GFF4380	0.43	-0.3
11,144	+		GFF4380	0.43	-0.2
11,144	+		GFF4380	0.43	+1.4
11,145	-		GFF4380	0.44	-0.2
11,145	-		GFF4380	0.44	+0.2
11,145	-		GFF4380	0.44	+0.1
11,145	-		GFF4380	0.44	-0.4
11,145	-		GFF4380	0.44	-0.4
11,145	-		GFF4380	0.44	-1.1
11,145	-		GFF4380	0.44	-0.3
11,145	-		GFF4380	0.44	+0.2
11,145	-		GFF4380	0.44	-0.2
11,218	+		GFF4380	0.70	-0.2
11,218	+		GFF4380	0.70	-0.3
11,218	+		GFF4380	0.70	+0.8
11,218	+		GFF4380	0.70	-0.4
11,218	+		GFF4380	0.70	+0.0
11,218	+		GFF4380	0.70	-0.7
11,218	+		GFF4380	0.70	+0.2
11,218	+		GFF4380	0.70	+2.1
11,218	+		GFF4380	0.70	+0.8
11,218	+		GFF4380	0.70	-1.1
11,218	+		GFF4380	0.70	+0.5
11,218	+		GFF4380	0.70	-0.5
11,219	-		GFF4380	0.71	+0.3
11,219	-		GFF4380	0.71	-0.8
11,219	-		GFF4380	0.71	-0.0
11,219	-		GFF4380	0.71	-0.2
11,219	-		GFF4380	0.71	-0.2
11,219	-		GFF4380	0.71	-0.3
11,219	-		GFF4380	0.71	-0.1
11,219	-		GFF4380	0.71	-0.8
11,219	-		GFF4380	0.71	+0.2
11,219	-		GFF4380	0.71	-0.4
11,219	-		GFF4380	0.71	-0.2
11,219	-		GFF4380	0.71	-1.6
11,219	-		GFF4380	0.71	+0.8
11,220	+		GFF4380	0.71	+1.8
11,220	+		GFF4380	0.71	+0.7
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	+0.1
11,220	+		GFF4380	0.71	+0.8
11,220	+		GFF4380	0.71	+0.1
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	+0.3
11,220	+		GFF4380	0.71	-1.5
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-1.4
11,220	+		GFF4380	0.71	+0.1
11,220	+		GFF4380	0.71	-0.9
11,220	+		GFF4380	0.71	+0.3
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	-0.4
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	+0.3
11,220	+		GFF4380	0.71	+0.5
11,220	+		GFF4380	0.71	+0.0
11,220	+		GFF4380	0.71	-1.1
11,220	+		GFF4380	0.71	-1.0
11,220	+		GFF4380	0.71	-0.5
11,220	+		GFF4380	0.71	-0.9
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	+0.6
11,220	+		GFF4380	0.71	-0.3
11,220	+		GFF4380	0.71	-0.3
11,220	+		GFF4380	0.71	+0.5
11,220	+		GFF4380	0.71	-0.5
11,220	+		GFF4380	0.71	+0.0
11,220	+		GFF4380	0.71	-1.1
11,220	+		GFF4380	0.71	+1.0
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	-0.0
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.2
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-0.2
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	+2.6
11,221	-		GFF4380	0.71	+0.5
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	+0.8
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.2
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	+0.1
11,221	-		GFF4380	0.71	+0.4
11,221	-		GFF4380	0.71	-1.5
11,221	-		GFF4380	0.71	+1.2
11,221	-		GFF4380	0.71	-0.0
11,221	-		GFF4380	0.71	-0.1
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	+0.6
11,221	-		GFF4380	0.71	-1.3
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	-0.6
11,224	+		GFF4380	0.72	+1.8
11,224	+		GFF4380	0.72	-0.2
11,224	+		GFF4380	0.72	-0.7
11,224	+		GFF4380	0.72	-1.4
11,224	+		GFF4380	0.72	-0.6
11,224	+		GFF4380	0.72	+0.0
11,224	+		GFF4380	0.72	-1.5
11,224	+		GFF4380	0.72	+0.1
11,224	+		GFF4380	0.72	-0.9
11,225	-		GFF4380	0.73	+0.5
11,225	-		GFF4380	0.73	-0.0
11,225	-		GFF4380	0.73	-0.3
11,225	-		GFF4380	0.73	-0.9
11,225	-		GFF4380	0.73	-0.8
11,225	-		GFF4380	0.73	-0.1
11,225	-		GFF4380	0.73	+0.1
11,225	-		GFF4380	0.73	+0.6
11,225	-		GFF4380	0.73	-1.2
11,334	+				+0.8
11,380	-				+0.0
11,400	+				+0.8
11,410	+				-0.6
11,411	-				+0.1
11,411	-				+0.4
11,422	+				-0.1
11,422	+				-0.1
11,423	-				-2.5
11,449	-				+0.0
11,466	+				+0.7
11,466	+				+1.8
11,466	+				+0.3
11,467	-				-0.3
11,467	-				+1.1
11,467	-				+0.9
11,467	-				-0.8
11,518	+				+0.3
11,518	+				-0.5
11,518	+				-0.5
11,518	+				+0.2
11,518	+				-0.1
11,518	+				-1.0
11,518	+				+0.6
11,519	-				+0.3
11,519	-				-1.2
11,519	-				-0.1
11,544	+				-0.2
11,544	+				+1.2
11,544	+				+0.4
11,544	+				+0.2
11,544	+				+1.4
11,544	+				-0.1
11,544	+				-2.1
11,544	+				-0.4
11,544	+				+0.7
11,544	+				+0.4
11,544	+				-0.2
11,544	+				+0.6
11,544	+				+0.4
11,544	+				+0.5
11,545	-				-0.0
11,545	-				+0.1
11,545	-				+0.4
11,545	-				+2.8
11,545	-				+0.8
11,545	-				+2.8
11,545	-				+0.1
11,545	-				-0.3
11,545	-				+0.6
11,545	-				-0.6
11,777	+		GFF4381	0.40	-0.1
11,809	+		GFF4381	0.49	-0.4
11,809	+		GFF4381	0.49	+0.3
11,809	+		GFF4381	0.49	-1.0
11,809	+		GFF4381	0.49	-0.3
11,810	-		GFF4381	0.49	-0.1
11,810	-		GFF4381	0.49	-0.3
11,918	-		GFF4381	0.80	+0.6
11,918	-		GFF4381	0.80	+0.7
11,918	-		GFF4381	0.80	+0.4
11,918	-		GFF4381	0.80	-2.0
11,947	+		GFF4381	0.88	-0.7
11,947	+		GFF4381	0.88	+0.0
11,947	+		GFF4381	0.88	-0.1
11,947	+		GFF4381	0.88	-1.2
11,947	+		GFF4381	0.88	-0.9
11,947	+		GFF4381	0.88	+0.1
11,948	-		GFF4381	0.88	-0.5
11,948	-		GFF4381	0.88	-0.7
11,948	-		GFF4381	0.88	+0.6
11,948	-		GFF4381	0.88	+0.1
11,948	-		GFF4381	0.88	-1.5
11,948	-		GFF4381	0.88	-0.4
11,948	-		GFF4381	0.88	-0.1