Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4366 and GFF4367 are separated by 7 nucleotides GFF4367 and GFF4368 are separated by 35 nucleotides GFF4368 and GFF4369 are separated by 51 nucleotides GFF4369 and GFF4370 are separated by 110 nucleotides
GFF4366 - BUG/TctC family periplasmic protein, at 289,791 to 290,777
GFF4366
GFF4367 - KEGG: regulator of ribonuclease activity A, at 290,785 to 291,270
GFF4367
GFF4368 - Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4), at 291,306 to 293,294
GFF4368
GFF4369 - no description, at 293,346 to 293,600
GFF4369
GFF4370 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 293,711 to 296,095
GFF4370
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -1
0
1
2
3 at 290.498 kb on - strand, within GFF4366 at 290.541 kb on + strand, within GFF4366 at 291.288 kb on - strand at 292.135 kb on + strand, within GFF4368 at 292.136 kb on - strand, within GFF4368 at 292.136 kb on - strand, within GFF4368 at 292.136 kb on - strand, within GFF4368 at 292.226 kb on - strand, within GFF4368 at 292.304 kb on - strand, within GFF4368 at 292.304 kb on - strand, within GFF4368 at 292.322 kb on - strand, within GFF4368 at 292.702 kb on + strand, within GFF4368 at 292.771 kb on + strand, within GFF4368 at 293.047 kb on + strand, within GFF4368 at 293.048 kb on - strand, within GFF4368 at 293.056 kb on + strand, within GFF4368 at 293.328 kb on + strand at 293.451 kb on + strand, within GFF4369 at 293.476 kb on + strand, within GFF4369 at 293.476 kb on + strand, within GFF4369 at 293.477 kb on - strand, within GFF4369 at 293.505 kb on - strand, within GFF4369 at 293.505 kb on - strand, within GFF4369 at 293.515 kb on + strand, within GFF4369 at 293.516 kb on - strand, within GFF4369 at 293.705 kb on - strand at 293.793 kb on - strand at 293.996 kb on + strand, within GFF4370 at 293.996 kb on + strand, within GFF4370 at 293.996 kb on - strand, within GFF4370 at 293.997 kb on - strand, within GFF4370
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 290,498 - GFF4366 0.72 -0.6 290,541 + GFF4366 0.76 -0.3 291,288 - -0.3 292,135 + GFF4368 0.42 -0.1 292,136 - GFF4368 0.42 +1.3 292,136 - GFF4368 0.42 -0.8 292,136 - GFF4368 0.42 +1.6 292,226 - GFF4368 0.46 -0.4 292,304 - GFF4368 0.50 -0.6 292,304 - GFF4368 0.50 +0.8 292,322 - GFF4368 0.51 +0.1 292,702 + GFF4368 0.70 +0.8 292,771 + GFF4368 0.74 -0.3 293,047 + GFF4368 0.88 +3.4 293,048 - GFF4368 0.88 +0.8 293,056 + GFF4368 0.88 -0.5 293,328 + -0.4 293,451 + GFF4369 0.41 +0.8 293,476 + GFF4369 0.51 -0.2 293,476 + GFF4369 0.51 -0.3 293,477 - GFF4369 0.51 +0.6 293,505 - GFF4369 0.62 -0.3 293,505 - GFF4369 0.62 -1.1 293,515 + GFF4369 0.66 -0.4 293,516 - GFF4369 0.67 +0.3 293,705 - +0.8 293,793 - -0.2 293,996 + GFF4370 0.12 +0.6 293,996 + GFF4370 0.12 -0.1 293,996 - GFF4370 0.12 +0.1 293,997 - GFF4370 0.12 -0.1
Or see this region's nucleotide sequence