Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4326 and GFF4327 are separated by 43 nucleotides GFF4327 and GFF4328 are separated by 47 nucleotides GFF4328 and GFF4329 are separated by 151 nucleotides GFF4329 and GFF4330 are separated by 3 nucleotides
GFF4326 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1), at 247,864 to 249,090
GFF4326
GFF4327 - Enoyl-CoA hydratase (EC 4.2.1.17), at 249,134 to 249,931
GFF4327
GFF4328 - hypothetical protein, at 249,979 to 251,094
GFF4328
GFF4329 - Enoyl-CoA hydratase (EC 4.2.1.17), at 251,246 to 252,037
GFF4329
GFF4330 - Acyl-CoA thioesterase II (EC 3.1.2.-), at 252,041 to 252,949
GFF4330
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -1
0
1
2 at 250.010 kb on + strand at 250.157 kb on + strand, within GFF4328 at 250.158 kb on - strand, within GFF4328 at 250.226 kb on + strand, within GFF4328 at 250.416 kb on - strand, within GFF4328 at 250.508 kb on + strand, within GFF4328 at 251.116 kb on + strand at 251.116 kb on + strand at 251.117 kb on - strand at 251.131 kb on + strand at 251.144 kb on + strand at 251.183 kb on - strand at 251.459 kb on + strand, within GFF4329 at 251.459 kb on + strand, within GFF4329 at 251.460 kb on - strand, within GFF4329
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 250,010 + -0.5 250,157 + GFF4328 0.16 +0.6 250,158 - GFF4328 0.16 +0.3 250,226 + GFF4328 0.22 +1.6 250,416 - GFF4328 0.39 -0.0 250,508 + GFF4328 0.47 -0.4 251,116 + +0.5 251,116 + -0.3 251,117 - -0.5 251,131 + +1.8 251,144 + -0.3 251,183 - -0.5 251,459 + GFF4329 0.27 -0.9 251,459 + GFF4329 0.27 +0.9 251,460 - GFF4329 0.27 -0.3
Or see this region's nucleotide sequence