Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4308 and GFF4309 are separated by 1 nucleotides GFF4309 and GFF4310 overlap by 4 nucleotides GFF4310 and GFF4311 overlap by 8 nucleotides GFF4311 and GFF4312 are separated by 63 nucleotides
GFF4308 - hypothetical protein, at 228,158 to 229,363
GFF4308
GFF4309 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 229,365 to 230,201
GFF4309
GFF4310 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 230,198 to 232,054
GFF4310
GFF4311 - Enoyl-CoA hydratase (EC 4.2.1.17), at 232,047 to 232,892
GFF4311
GFF4312 - Citronellol dehydrogenase; Citronellal dehydrogenase, at 232,956 to 233,825
GFF4312
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -1
0
1
2
3 at 229.304 kb on + strand at 229.304 kb on + strand at 229.305 kb on - strand at 229.305 kb on - strand at 229.310 kb on + strand at 229.311 kb on - strand at 229.867 kb on + strand, within GFF4309 at 229.867 kb on + strand, within GFF4309 at 229.868 kb on - strand, within GFF4309 at 230.016 kb on + strand, within GFF4309 at 230.315 kb on + strand at 230.315 kb on + strand at 230.316 kb on - strand at 230.316 kb on - strand at 231.131 kb on + strand, within GFF4310 at 231.221 kb on + strand, within GFF4310 at 231.221 kb on + strand, within GFF4310 at 231.252 kb on - strand, within GFF4310 at 231.827 kb on + strand, within GFF4310 at 231.827 kb on + strand, within GFF4310 at 232.046 kb on + strand at 232.952 kb on + strand at 232.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 229,304 + -0.7 229,304 + -0.0 229,305 - -1.2 229,305 - +1.0 229,310 + -1.0 229,311 - -0.2 229,867 + GFF4309 0.60 -0.2 229,867 + GFF4309 0.60 +2.8 229,868 - GFF4309 0.60 +1.8 230,016 + GFF4309 0.78 -1.4 230,315 + +0.2 230,315 + -0.3 230,316 - -0.9 230,316 - -0.3 231,131 + GFF4310 0.50 +0.9 231,221 + GFF4310 0.55 -0.8 231,221 + GFF4310 0.55 +0.8 231,252 - GFF4310 0.57 -0.1 231,827 + GFF4310 0.88 +1.4 231,827 + GFF4310 0.88 +1.2 232,046 + -1.2 232,952 + +0.2 232,975 - -1.0
Or see this region's nucleotide sequence