Strain Fitness in Variovorax sp. SCN45 around GFF4260

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4258 and GFF4259 are separated by 34 nucleotidesGFF4259 and GFF4260 are separated by 154 nucleotidesGFF4260 and GFF4261 are separated by 160 nucleotidesGFF4261 and GFF4262 overlap by 4 nucleotides GFF4258 - no description, at 173,734 to 174,105 GFF4258 GFF4259 - Transcriptional regulator, DeoR family, at 174,140 to 174,862 GFF4259 GFF4260 - hypothetical protein, at 175,017 to 179,039 GFF4260 GFF4261 - RNA polymerase ECF-type sigma factor, at 179,200 to 179,751 GFF4261 GFF4262 - hypothetical protein, at 179,748 to 180,893 GFF4262 Position (kb) 175 176 177 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 174.047 kb on + strand, within GFF4258at 174.048 kb on - strand, within GFF4258at 174.048 kb on - strand, within GFF4258at 174.048 kb on - strand, within GFF4258at 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.141 kb on + strandat 174.142 kb on - strandat 174.142 kb on - strandat 174.142 kb on - strandat 174.170 kb on + strandat 174.170 kb on + strandat 174.171 kb on - strandat 174.171 kb on - strandat 174.171 kb on - strandat 174.400 kb on - strand, within GFF4259at 174.687 kb on + strand, within GFF4259at 174.688 kb on - strand, within GFF4259at 174.874 kb on + strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.875 kb on - strandat 174.950 kb on + strandat 174.950 kb on + strandat 174.950 kb on + strandat 174.950 kb on + strandat 174.950 kb on + strandat 174.950 kb on + strandat 174.951 kb on - strandat 174.951 kb on - strandat 174.951 kb on - strandat 174.951 kb on - strandat 174.951 kb on - strandat 174.954 kb on - strandat 174.954 kb on - strandat 174.967 kb on - strandat 174.981 kb on + strandat 174.981 kb on + strandat 174.982 kb on - strandat 175.000 kb on + strandat 175.000 kb on + strandat 175.000 kb on + strandat 175.000 kb on + strandat 175.000 kb on + strandat 175.001 kb on - strandat 175.001 kb on - strandat 175.001 kb on - strandat 175.029 kb on + strandat 175.029 kb on + strandat 175.488 kb on + strand, within GFF4260at 175.488 kb on + strand, within GFF4260at 175.488 kb on + strand, within GFF4260at 175.489 kb on - strand, within GFF4260at 175.689 kb on + strand, within GFF4260at 175.689 kb on + strand, within GFF4260at 175.690 kb on - strand, within GFF4260at 176.335 kb on + strand, within GFF4260at 176.336 kb on - strand, within GFF4260at 176.410 kb on + strand, within GFF4260at 176.410 kb on + strand, within GFF4260at 176.410 kb on + strand, within GFF4260at 176.410 kb on + strand, within GFF4260at 176.411 kb on - strand, within GFF4260at 176.544 kb on + strand, within GFF4260at 176.544 kb on + strand, within GFF4260at 176.545 kb on - strand, within GFF4260at 176.545 kb on - strand, within GFF4260at 176.545 kb on - strand, within GFF4260at 176.832 kb on + strand, within GFF4260at 176.832 kb on + strand, within GFF4260at 176.833 kb on - strand, within GFF4260at 177.964 kb on - strand, within GFF4260at 177.972 kb on + strand, within GFF4260at 177.973 kb on - strand, within GFF4260at 178.009 kb on - strand, within GFF4260at 178.009 kb on - strand, within GFF4260at 178.009 kb on - strand, within GFF4260at 178.009 kb on - strand, within GFF4260at 178.074 kb on + strand, within GFF4260at 178.074 kb on + strand, within GFF4260at 178.074 kb on + strand, within GFF4260at 178.075 kb on - strand, within GFF4260at 178.447 kb on - strand, within GFF4260at 178.447 kb on - strand, within GFF4260at 179.112 kb on + strandat 179.112 kb on + strandat 179.195 kb on - strandat 179.212 kb on + strandat 179.212 kb on + strandat 179.213 kb on - strandat 179.213 kb on - strandat 179.213 kb on - strandat 179.215 kb on + strandat 179.216 kb on - strandat 179.290 kb on + strand, within GFF4261at 179.290 kb on + strand, within GFF4261at 179.354 kb on - strand, within GFF4261at 179.354 kb on - strand, within GFF4261at 179.354 kb on - strand, within GFF4261at 179.509 kb on + strand, within GFF4261at 179.509 kb on + strand, within GFF4261at 179.509 kb on + strand, within GFF4261at 179.509 kb on + strand, within GFF4261at 179.509 kb on + strand, within GFF4261at 179.510 kb on - strand, within GFF4261at 179.510 kb on - strand, within GFF4261at 179.510 kb on - strand, within GFF4261at 179.735 kb on + strandat 179.735 kb on + strandat 179.736 kb on - strandat 179.736 kb on - strandat 179.736 kb on - strandat 179.736 kb on - strandat 179.817 kb on + strandat 179.817 kb on + strandat 179.818 kb on - strandat 179.949 kb on + strand, within GFF4262at 179.950 kb on - strand, within GFF4262at 179.950 kb on - strand, within GFF4262

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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174,047 + GFF4258 0.84 -0.6
174,048 - GFF4258 0.84 -0.2
174,048 - GFF4258 0.84 -0.6
174,048 - GFF4258 0.84 +0.5
174,141 + +0.2
174,141 + -0.5
174,141 + -0.4
174,141 + +0.2
174,141 + +0.0
174,141 + -1.4
174,141 + -2.0
174,141 + -1.2
174,141 + +0.5
174,142 - -0.1
174,142 - -0.2
174,142 - +0.3
174,170 + -0.7
174,170 + +0.4
174,171 - +1.8
174,171 - -0.3
174,171 - +0.4
174,400 - GFF4259 0.36 -0.6
174,687 + GFF4259 0.76 -0.1
174,688 - GFF4259 0.76 +1.3
174,874 + -0.4
174,875 - +0.0
174,875 - -0.5
174,875 - -0.5
174,875 - -0.4
174,875 - -0.0
174,875 - -1.0
174,875 - +0.5
174,950 + -0.5
174,950 + -0.4
174,950 + -0.4
174,950 + +1.0
174,950 + +0.1
174,950 + -0.5
174,951 - -1.0
174,951 - +1.1
174,951 - -0.6
174,951 - -0.0
174,951 - -0.1
174,954 - -0.2
174,954 - -0.4
174,967 - +0.0
174,981 + -0.1
174,981 + -0.1
174,982 - +0.7
175,000 + +0.3
175,000 + -0.3
175,000 + -0.4
175,000 + +0.7
175,000 + -0.1
175,001 - -0.4
175,001 - -0.3
175,001 - +0.3
175,029 + -0.6
175,029 + -0.2
175,488 + GFF4260 0.12 -0.5
175,488 + GFF4260 0.12 +0.3
175,488 + GFF4260 0.12 -2.2
175,489 - GFF4260 0.12 +0.8
175,689 + GFF4260 0.17 -1.7
175,689 + GFF4260 0.17 +0.3
175,690 - GFF4260 0.17 +1.8
176,335 + GFF4260 0.33 +0.1
176,336 - GFF4260 0.33 +1.1
176,410 + GFF4260 0.35 -0.1
176,410 + GFF4260 0.35 -1.5
176,410 + GFF4260 0.35 -0.0
176,410 + GFF4260 0.35 -0.4
176,411 - GFF4260 0.35 +0.1
176,544 + GFF4260 0.38 -0.1
176,544 + GFF4260 0.38 +0.7
176,545 - GFF4260 0.38 -0.5
176,545 - GFF4260 0.38 +0.5
176,545 - GFF4260 0.38 -0.2
176,832 + GFF4260 0.45 -0.0
176,832 + GFF4260 0.45 +0.1
176,833 - GFF4260 0.45 +0.4
177,964 - GFF4260 0.73 -0.5
177,972 + GFF4260 0.73 -0.3
177,973 - GFF4260 0.73 +2.3
178,009 - GFF4260 0.74 +0.1
178,009 - GFF4260 0.74 -0.1
178,009 - GFF4260 0.74 -0.9
178,009 - GFF4260 0.74 -0.5
178,074 + GFF4260 0.76 -0.3
178,074 + GFF4260 0.76 +1.0
178,074 + GFF4260 0.76 +1.4
178,075 - GFF4260 0.76 +0.6
178,447 - GFF4260 0.85 +1.8
178,447 - GFF4260 0.85 -0.4
179,112 + -1.4
179,112 + +1.2
179,195 - -2.5
179,212 + -1.0
179,212 + -0.0
179,213 - -0.2
179,213 - -0.5
179,213 - -0.9
179,215 + +0.9
179,216 - -0.4
179,290 + GFF4261 0.16 +0.0
179,290 + GFF4261 0.16 -0.2
179,354 - GFF4261 0.28 -0.2
179,354 - GFF4261 0.28 +0.3
179,354 - GFF4261 0.28 -0.2
179,509 + GFF4261 0.56 +0.0
179,509 + GFF4261 0.56 -0.1
179,509 + GFF4261 0.56 -0.7
179,509 + GFF4261 0.56 +1.8
179,509 + GFF4261 0.56 +0.6
179,510 - GFF4261 0.56 -1.0
179,510 - GFF4261 0.56 +0.5
179,510 - GFF4261 0.56 -0.9
179,735 + -0.3
179,735 + +0.8
179,736 - +0.3
179,736 - -0.0
179,736 - -0.2
179,736 - -0.3
179,817 + -0.1
179,817 + +0.1
179,818 - -1.1
179,949 + GFF4262 0.18 -0.8
179,950 - GFF4262 0.18 -0.7
179,950 - GFF4262 0.18 -0.8

Or see this region's nucleotide sequence