Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4220 and GFF4221 overlap by 4 nucleotides GFF4221 and GFF4222 overlap by 4 nucleotides GFF4222 and GFF4223 are separated by 34 nucleotides
GFF4220 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 133,232 to 133,918
GFF4220
GFF4221 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 133,915 to 134,577
GFF4221
GFF4222 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 134,574 to 135,767
GFF4222
GFF4223 - BUG/TctC family periplasmic protein, at 135,802 to 136,788
GFF4223
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.076 kb on - strand, within GFF4221 at 134.076 kb on - strand, within GFF4221 at 134.313 kb on - strand, within GFF4221 at 134.959 kb on + strand, within GFF4222 at 134.960 kb on - strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.637 kb on + strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.758 kb on - strand at 136.230 kb on - strand, within GFF4223 at 136.230 kb on - strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 134,076 - GFF4221 0.24 -0.9 134,076 - GFF4221 0.24 -0.3 134,313 - GFF4221 0.60 +0.6 134,959 + GFF4222 0.32 -1.1 134,960 - GFF4222 0.32 +1.2 135,550 + GFF4222 0.82 -0.1 135,550 + GFF4222 0.82 +0.1 135,551 - GFF4222 0.82 +0.2 135,551 - GFF4222 0.82 -0.9 135,637 + GFF4222 0.89 -0.8 135,638 - GFF4222 0.89 -0.6 135,638 - GFF4222 0.89 -0.9 135,638 - GFF4222 0.89 -0.6 135,758 - +1.0 136,230 - GFF4223 0.43 -2.0 136,230 - GFF4223 0.43 +0.0 136,423 + GFF4223 0.63 +2.4 136,423 + GFF4223 0.63 +0.3 136,423 + GFF4223 0.63 -0.1 136,423 + GFF4223 0.63 +0.2 136,424 - GFF4223 0.63 -0.5 136,424 - GFF4223 0.63 -0.4 136,424 - GFF4223 0.63 -0.1 136,424 - GFF4223 0.63 -1.0 136,424 - GFF4223 0.63 -0.9 136,427 + GFF4223 0.63 -1.0 136,427 + GFF4223 0.63 -0.1 136,427 + GFF4223 0.63 +0.8 136,704 - -0.1
Or see this region's nucleotide sequence