Strain Fitness in Variovorax sp. SCN45 around GFF3923

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3922 and GFF3923 are separated by 10 nucleotidesGFF3923 and GFF3924 are separated by 77 nucleotidesGFF3924 and GFF3925 overlap by 4 nucleotidesGFF3925 and GFF3926 are separated by 28 nucleotides GFF3922 - Kynureninase (EC 3.7.1.3), at 128,087 to 129,364 GFF3922 GFF3923 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 129,375 to 130,025 GFF3923 GFF3924 - Ferredoxin, at 130,103 to 130,417 GFF3924 GFF3925 - hypothetical protein, at 130,414 to 130,971 GFF3925 GFF3926 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 131,000 to 131,962 GFF3926 Position (kb) 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 128.547 kb on + strand, within GFF3922at 128.548 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.703 kb on + strand, within GFF3922at 128.704 kb on - strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.853 kb on + strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.970 kb on + strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.273 kb on + strandat 129.274 kb on - strandat 129.396 kb on + strandat 129.396 kb on + strandat 129.396 kb on + strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.457 kb on + strand, within GFF3923at 129.457 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.835 kb on + strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.940 kb on + strand, within GFF3923at 129.941 kb on - strand, within GFF3923at 129.941 kb on - strand, within GFF3923at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.378 kb on - strand, within GFF3924at 130.378 kb on - strand, within GFF3924at 130.500 kb on - strand, within GFF3925at 130.500 kb on - strand, within GFF3925at 130.500 kb on - strand, within GFF3925at 130.671 kb on - strand, within GFF3925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
128,547 + GFF3922 0.36 +0.0
128,548 - GFF3922 0.36 +0.4
128,575 - GFF3922 0.38 -1.1
128,575 - GFF3922 0.38 +0.4
128,697 + GFF3922 0.48 -1.2
128,697 + GFF3922 0.48 -0.4
128,697 + GFF3922 0.48 -1.1
128,697 + GFF3922 0.48 -0.7
128,697 + GFF3922 0.48 +0.3
128,698 - GFF3922 0.48 -0.8
128,698 - GFF3922 0.48 +1.0
128,698 - GFF3922 0.48 +0.1
128,698 - GFF3922 0.48 +0.2
128,698 - GFF3922 0.48 +0.3
128,703 + GFF3922 0.48 -0.9
128,704 - GFF3922 0.48 +1.0
128,721 + GFF3922 0.50 +0.3
128,721 + GFF3922 0.50 -1.2
128,721 + GFF3922 0.50 -0.6
128,721 + GFF3922 0.50 +1.4
128,853 + GFF3922 0.60 -0.2
128,854 - GFF3922 0.60 -0.1
128,854 - GFF3922 0.60 -0.1
128,970 + GFF3922 0.69 -0.6
128,971 - GFF3922 0.69 +0.8
128,971 - GFF3922 0.69 -0.8
128,971 - GFF3922 0.69 +0.9
128,971 - GFF3922 0.69 +0.2
129,060 + GFF3922 0.76 -0.2
129,060 + GFF3922 0.76 +0.1
129,060 + GFF3922 0.76 +1.2
129,060 + GFF3922 0.76 +0.0
129,060 + GFF3922 0.76 +0.6
129,060 + GFF3922 0.76 -0.8
129,061 - GFF3922 0.76 -0.8
129,061 - GFF3922 0.76 +0.3
129,061 - GFF3922 0.76 -0.3
129,092 + GFF3922 0.79 -0.4
129,092 + GFF3922 0.79 +0.3
129,092 + GFF3922 0.79 +0.5
129,092 + GFF3922 0.79 -0.1
129,092 + GFF3922 0.79 +0.2
129,092 + GFF3922 0.79 +0.8
129,092 + GFF3922 0.79 +0.2
129,092 + GFF3922 0.79 +0.9
129,093 - GFF3922 0.79 +0.4
129,093 - GFF3922 0.79 -0.0
129,093 - GFF3922 0.79 -0.3
129,273 + -1.4
129,274 - -1.2
129,396 + -0.0
129,396 + +0.4
129,396 + +1.2
129,397 - -0.8
129,397 - +0.5
129,397 - +0.4
129,397 - -0.5
129,457 + GFF3923 0.13 +0.2
129,457 + GFF3923 0.13 -0.6
129,676 + GFF3923 0.46 +0.4
129,676 + GFF3923 0.46 +0.5
129,676 + GFF3923 0.46 -0.3
129,676 + GFF3923 0.46 -0.3
129,676 + GFF3923 0.46 +0.4
129,676 + GFF3923 0.46 -0.2
129,676 + GFF3923 0.46 -0.6
129,676 + GFF3923 0.46 +0.4
129,676 + GFF3923 0.46 +0.3
129,676 + GFF3923 0.46 +1.2
129,676 + GFF3923 0.46 -0.2
129,677 - GFF3923 0.46 +1.4
129,677 - GFF3923 0.46 +3.1
129,677 - GFF3923 0.46 -0.0
129,677 - GFF3923 0.46 -0.1
129,677 - GFF3923 0.46 -0.0
129,677 - GFF3923 0.46 -0.8
129,677 - GFF3923 0.46 +0.0
129,677 - GFF3923 0.46 -0.1
129,680 + GFF3923 0.47 -0.5
129,680 + GFF3923 0.47 -0.1
129,680 + GFF3923 0.47 +0.1
129,680 + GFF3923 0.47 +0.2
129,680 + GFF3923 0.47 +0.2
129,680 + GFF3923 0.47 +0.4
129,680 + GFF3923 0.47 -0.4
129,681 - GFF3923 0.47 -0.8
129,681 - GFF3923 0.47 +0.2
129,681 - GFF3923 0.47 +1.0
129,835 + GFF3923 0.71 +0.3
129,836 - GFF3923 0.71 +0.6
129,836 - GFF3923 0.71 +0.1
129,836 - GFF3923 0.71 +0.5
129,836 - GFF3923 0.71 -0.6
129,836 - GFF3923 0.71 +2.3
129,940 + GFF3923 0.87 +0.2
129,941 - GFF3923 0.87 +1.2
129,941 - GFF3923 0.87 -0.1
130,206 + GFF3924 0.33 +0.5
130,206 + GFF3924 0.33 +0.2
130,206 + GFF3924 0.33 +1.2
130,206 + GFF3924 0.33 +0.2
130,206 + GFF3924 0.33 -0.3
130,206 + GFF3924 0.33 +0.1
130,206 + GFF3924 0.33 +0.8
130,206 + GFF3924 0.33 -2.9
130,207 - GFF3924 0.33 +1.0
130,207 - GFF3924 0.33 +0.6
130,207 - GFF3924 0.33 -0.1
130,207 - GFF3924 0.33 -0.3
130,207 - GFF3924 0.33 +0.8
130,207 - GFF3924 0.33 -1.4
130,207 - GFF3924 0.33 -0.4
130,207 - GFF3924 0.33 -1.8
130,207 - GFF3924 0.33 -0.3
130,207 - GFF3924 0.33 +0.2
130,207 - GFF3924 0.33 +0.2
130,207 - GFF3924 0.33 +1.5
130,378 - GFF3924 0.87 +0.8
130,378 - GFF3924 0.87 +0.8
130,500 - GFF3925 0.15 +0.4
130,500 - GFF3925 0.15 -0.7
130,500 - GFF3925 0.15 -0.1
130,671 - GFF3925 0.46 -0.3

Or see this region's nucleotide sequence