Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3774 and GFF3775 overlap by 4 nucleotides GFF3775 and GFF3776 are separated by 167 nucleotides GFF3776 and GFF3777 are separated by 6 nucleotides
GFF3774 - hypothetical protein, at 265,400 to 266,797
GFF3774
GFF3775 - Two-component transcriptional response regulator, OmpR family, at 266,794 to 267,468
GFF3775
GFF3776 - no description, at 267,636 to 268,025
GFF3776
GFF3777 - Prolyl endopeptidase (EC 3.4.21.26), at 268,032 to 270,083
GFF3777
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 266.711 kb on + strand at 267.121 kb on + strand, within GFF3775 at 267.121 kb on + strand, within GFF3775 at 267.122 kb on - strand, within GFF3775 at 267.122 kb on - strand, within GFF3775 at 267.176 kb on + strand, within GFF3775 at 267.177 kb on - strand, within GFF3775 at 267.252 kb on + strand, within GFF3775 at 267.253 kb on - strand, within GFF3775 at 267.531 kb on + strand at 267.554 kb on - strand at 267.631 kb on + strand at 267.631 kb on + strand at 267.631 kb on + strand at 267.632 kb on - strand at 267.632 kb on - strand at 267.632 kb on - strand at 267.780 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.787 kb on - strand, within GFF3776 at 267.787 kb on - strand, within GFF3776 at 267.787 kb on - strand, within GFF3776 at 267.912 kb on + strand, within GFF3776 at 268.055 kb on - strand at 268.055 kb on - strand at 268.055 kb on - strand at 268.055 kb on - strand at 268.055 kb on - strand at 268.055 kb on - strand at 268.060 kb on + strand at 268.060 kb on + strand at 268.061 kb on - strand at 268.061 kb on - strand at 268.061 kb on - strand at 268.132 kb on + strand at 268.267 kb on + strand, within GFF3777 at 268.267 kb on + strand, within GFF3777 at 268.268 kb on - strand, within GFF3777 at 268.268 kb on - strand, within GFF3777 at 268.322 kb on - strand, within GFF3777 at 268.406 kb on - strand, within GFF3777 at 268.417 kb on + strand, within GFF3777 at 268.418 kb on - strand, within GFF3777 at 268.621 kb on + strand, within GFF3777 at 268.621 kb on + strand, within GFF3777 at 268.621 kb on + strand, within GFF3777 at 268.622 kb on - strand, within GFF3777 at 268.622 kb on - strand, within GFF3777 at 268.622 kb on - strand, within GFF3777 at 268.622 kb on - strand, within GFF3777 at 268.622 kb on - strand, within GFF3777 at 268.666 kb on + strand, within GFF3777 at 268.666 kb on + strand, within GFF3777 at 268.667 kb on - strand, within GFF3777 at 268.705 kb on + strand, within GFF3777 at 268.763 kb on - strand, within GFF3777 at 268.885 kb on + strand, within GFF3777 at 268.886 kb on - strand, within GFF3777 at 268.927 kb on + strand, within GFF3777 at 268.928 kb on - strand, within GFF3777 at 268.928 kb on - strand, within GFF3777 at 268.928 kb on - strand, within GFF3777
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 266,711 + -0.4 267,121 + GFF3775 0.48 -0.8 267,121 + GFF3775 0.48 +0.8 267,122 - GFF3775 0.49 -0.9 267,122 - GFF3775 0.49 +0.2 267,176 + GFF3775 0.57 -0.1 267,177 - GFF3775 0.57 +0.2 267,252 + GFF3775 0.68 -1.2 267,253 - GFF3775 0.68 -0.9 267,531 + +0.6 267,554 - +0.5 267,631 + +0.3 267,631 + +0.9 267,631 + -0.2 267,632 - -1.1 267,632 - -0.3 267,632 - -0.2 267,780 + GFF3776 0.37 +0.1 267,786 + GFF3776 0.38 -1.7 267,786 + GFF3776 0.38 -1.0 267,786 + GFF3776 0.38 -0.0 267,787 - GFF3776 0.39 +1.4 267,787 - GFF3776 0.39 +0.1 267,787 - GFF3776 0.39 -1.1 267,912 + GFF3776 0.71 -1.6 268,055 - -0.1 268,055 - -0.6 268,055 - -1.1 268,055 - -1.0 268,055 - -1.1 268,055 - -0.0 268,060 + -1.1 268,060 + -0.7 268,061 - -0.1 268,061 - -0.1 268,061 - +0.9 268,132 + -1.2 268,267 + GFF3777 0.11 -0.7 268,267 + GFF3777 0.11 -0.9 268,268 - GFF3777 0.12 -0.6 268,268 - GFF3777 0.12 +1.5 268,322 - GFF3777 0.14 -1.0 268,406 - GFF3777 0.18 -0.5 268,417 + GFF3777 0.19 +0.1 268,418 - GFF3777 0.19 -0.5 268,621 + GFF3777 0.29 +0.0 268,621 + GFF3777 0.29 -0.7 268,621 + GFF3777 0.29 -0.2 268,622 - GFF3777 0.29 -0.4 268,622 - GFF3777 0.29 -0.4 268,622 - GFF3777 0.29 +0.9 268,622 - GFF3777 0.29 -2.0 268,622 - GFF3777 0.29 +0.0 268,666 + GFF3777 0.31 -2.1 268,666 + GFF3777 0.31 -0.9 268,667 - GFF3777 0.31 +0.3 268,705 + GFF3777 0.33 -0.2 268,763 - GFF3777 0.36 +0.3 268,885 + GFF3777 0.42 +0.2 268,886 - GFF3777 0.42 -0.5 268,927 + GFF3777 0.44 -0.6 268,928 - GFF3777 0.44 -0.2 268,928 - GFF3777 0.44 +0.1 268,928 - GFF3777 0.44 -0.1
Or see this region's nucleotide sequence