Strain Fitness in Variovorax sp. SCN45 around GFF3772

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3770 and GFF3771 are separated by 72 nucleotidesGFF3771 and GFF3772 overlap by 4 nucleotidesGFF3772 and GFF3773 are separated by 10 nucleotidesGFF3773 and GFF3774 overlap by 4 nucleotides GFF3770 - hypothetical protein, at 261,504 to 262,868 GFF3770 GFF3771 - no description, at 262,941 to 263,495 GFF3771 GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412 GFF3772 GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403 GFF3773 GFF3774 - hypothetical protein, at 265,400 to 266,797 GFF3774 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 262.503 kb on + strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.866 kb on + strandat 262.899 kb on + strandat 262.899 kb on + strandat 262.900 kb on - strandat 262.900 kb on - strandat 262.900 kb on - strandat 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.088 kb on + strand, within GFF3771at 263.089 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.445 kb on + strandat 263.445 kb on + strandat 263.446 kb on - strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.493 kb on + strandat 263.655 kb on + strand, within GFF3772at 263.656 kb on - strand, within GFF3772at 264.380 kb on + strandat 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.659 kb on - strand, within GFF3773at 264.836 kb on - strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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262,503 + GFF3770 0.73 -0.3
262,504 - GFF3770 0.73 -1.3
262,504 - GFF3770 0.73 -0.6
262,866 + +0.1
262,899 + +1.2
262,899 + +0.6
262,900 - +0.9
262,900 - -0.0
262,900 - -0.9
263,001 + GFF3771 0.11 +0.1
263,001 + GFF3771 0.11 -0.8
263,001 + GFF3771 0.11 +0.7
263,001 + GFF3771 0.11 -0.3
263,001 + GFF3771 0.11 -0.2
263,001 + GFF3771 0.11 -0.7
263,001 + GFF3771 0.11 -2.8
263,002 - GFF3771 0.11 -0.1
263,002 - GFF3771 0.11 +0.3
263,002 - GFF3771 0.11 +0.4
263,002 - GFF3771 0.11 -0.4
263,002 - GFF3771 0.11 -0.4
263,079 + GFF3771 0.25 +0.1
263,079 + GFF3771 0.25 -1.2
263,079 + GFF3771 0.25 -0.2
263,079 + GFF3771 0.25 +0.9
263,079 + GFF3771 0.25 +1.3
263,079 + GFF3771 0.25 +1.7
263,079 + GFF3771 0.25 +0.3
263,080 - GFF3771 0.25 -0.0
263,080 - GFF3771 0.25 -0.4
263,080 - GFF3771 0.25 +2.3
263,080 - GFF3771 0.25 -0.5
263,080 - GFF3771 0.25 -0.6
263,080 - GFF3771 0.25 -0.9
263,080 - GFF3771 0.25 -0.1
263,088 + GFF3771 0.26 -0.1
263,089 - GFF3771 0.27 -0.6
263,203 - GFF3771 0.47 +1.1
263,203 - GFF3771 0.47 -0.7
263,214 + GFF3771 0.49 +0.1
263,214 + GFF3771 0.49 -1.0
263,214 + GFF3771 0.49 -0.1
263,214 + GFF3771 0.49 -0.5
263,214 + GFF3771 0.49 -0.4
263,215 - GFF3771 0.49 -1.1
263,215 - GFF3771 0.49 -0.1
263,215 - GFF3771 0.49 -1.1
263,215 - GFF3771 0.49 -0.3
263,215 - GFF3771 0.49 +0.3
263,215 - GFF3771 0.49 -0.6
263,215 - GFF3771 0.49 +0.5
263,215 - GFF3771 0.49 -0.0
263,215 - GFF3771 0.49 +0.1
263,215 - GFF3771 0.49 +1.3
263,215 - GFF3771 0.49 -0.5
263,445 + +0.5
263,445 + -1.1
263,446 - -0.4
263,454 + +0.3
263,454 + -0.5
263,454 + +2.2
263,454 + -0.9
263,454 + +0.5
263,454 + -1.3
263,454 + -1.1
263,455 - +1.0
263,455 - -0.9
263,455 - -1.1
263,455 - -0.2
263,493 + +0.0
263,655 + GFF3772 0.18 -0.3
263,656 - GFF3772 0.18 +1.0
264,380 + -0.5
264,658 + GFF3773 0.24 +0.4
264,658 + GFF3773 0.24 -0.1
264,658 + GFF3773 0.24 -0.1
264,659 - GFF3773 0.24 -0.4
264,836 - GFF3773 0.42 +0.0
264,985 + GFF3773 0.57 +0.7
264,985 + GFF3773 0.57 +1.7
264,985 + GFF3773 0.57 -0.7
264,985 + GFF3773 0.57 -0.5
264,986 - GFF3773 0.57 +0.3
264,986 - GFF3773 0.57 +0.1
264,986 - GFF3773 0.57 -0.4
264,993 + GFF3773 0.58 -0.5
264,993 + GFF3773 0.58 -0.5
264,993 + GFF3773 0.58 -0.0
264,994 - GFF3773 0.58 +0.3
264,994 - GFF3773 0.58 -0.1
264,994 - GFF3773 0.58 -1.5
264,994 - GFF3773 0.58 -0.9
264,994 - GFF3773 0.58 +0.9
265,258 + GFF3773 0.85 +0.5
265,258 + GFF3773 0.85 +0.4
265,258 + GFF3773 0.85 -0.9
265,258 + GFF3773 0.85 -1.7
265,258 + GFF3773 0.85 -0.5
265,258 + GFF3773 0.85 -0.1
265,259 - GFF3773 0.85 -0.7
265,259 - GFF3773 0.85 -0.1
265,259 - GFF3773 0.85 -0.8
265,259 - GFF3773 0.85 +0.3
265,331 - +0.6

Or see this region's nucleotide sequence