Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3748 and GFF3749 are separated by 72 nucleotides GFF3749 and GFF3750 overlap by 4 nucleotides GFF3750 and GFF3751 are separated by 46 nucleotides GFF3751 and GFF3752 are separated by 65 nucleotides
GFF3748 - KEGG: dihydrodipicolinate synthase , at 243,261 to 244,118
GFF3748
GFF3749 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 244,191 to 244,997
GFF3749
GFF3750 - no description, at 244,994 to 245,395
GFF3750
GFF3751 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 245,442 to 246,209
GFF3751
GFF3752 - KEGG: catechol 2,3-dioxygenase , at 246,275 to 246,826
GFF3752
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2 at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.143 kb on - strand at 244.228 kb on + strand at 244.229 kb on - strand at 244.558 kb on + strand, within GFF3749 at 245.070 kb on + strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.074 kb on - strand, within GFF3750 at 245.232 kb on + strand, within GFF3750 at 245.232 kb on + strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.233 kb on - strand, within GFF3750 at 245.271 kb on + strand, within GFF3750 at 245.271 kb on + strand, within GFF3750 at 245.271 kb on + strand, within GFF3750 at 245.271 kb on + strand, within GFF3750 at 245.271 kb on + strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.272 kb on - strand, within GFF3750 at 245.334 kb on + strand, within GFF3750 at 245.334 kb on + strand, within GFF3750 at 245.334 kb on + strand, within GFF3750 at 245.335 kb on - strand, within GFF3750 at 245.335 kb on - strand, within GFF3750 at 245.335 kb on - strand, within GFF3750 at 245.384 kb on + strand at 245.384 kb on + strand at 245.385 kb on - strand at 245.385 kb on - strand at 245.385 kb on - strand at 245.385 kb on - strand at 245.419 kb on + strand at 245.419 kb on + strand at 245.420 kb on - strand at 245.491 kb on + strand at 245.491 kb on + strand at 245.491 kb on + strand at 245.492 kb on - strand at 245.492 kb on - strand at 245.492 kb on - strand at 245.492 kb on - strand at 245.492 kb on - strand at 245.539 kb on + strand, within GFF3751 at 245.539 kb on + strand, within GFF3751 at 245.540 kb on - strand, within GFF3751 at 245.689 kb on + strand, within GFF3751 at 245.689 kb on + strand, within GFF3751 at 245.689 kb on + strand, within GFF3751 at 245.689 kb on + strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.690 kb on - strand, within GFF3751 at 245.914 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.132 kb on + strand, within GFF3751 at 246.133 kb on - strand at 246.133 kb on - strand at 246.372 kb on + strand, within GFF3752 at 246.372 kb on + strand, within GFF3752 at 246.372 kb on + strand, within GFF3752
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 244,051 + -1.6 244,051 + -0.5 244,051 + +1.3 244,051 + +0.7 244,051 + +0.2 244,052 - +0.5 244,052 - -0.8 244,052 - -0.0 244,052 - -0.6 244,052 - -0.2 244,052 - -0.9 244,052 - -1.5 244,143 - +0.2 244,228 + +0.7 244,229 - +0.4 244,558 + GFF3749 0.45 -0.3 245,070 + GFF3750 0.19 -0.2 245,071 - GFF3750 0.19 -0.1 245,071 - GFF3750 0.19 -0.5 245,071 - GFF3750 0.19 -0.5 245,073 + GFF3750 0.20 +1.9 245,073 + GFF3750 0.20 +1.5 245,073 + GFF3750 0.20 +0.3 245,074 - GFF3750 0.20 +0.2 245,232 + GFF3750 0.59 -0.9 245,232 + GFF3750 0.59 -0.3 245,233 - GFF3750 0.59 -0.4 245,233 - GFF3750 0.59 -0.2 245,233 - GFF3750 0.59 -0.2 245,233 - GFF3750 0.59 +0.7 245,233 - GFF3750 0.59 +0.5 245,233 - GFF3750 0.59 +1.5 245,271 + GFF3750 0.69 -0.5 245,271 + GFF3750 0.69 -0.2 245,271 + GFF3750 0.69 +0.6 245,271 + GFF3750 0.69 +0.3 245,271 + GFF3750 0.69 +0.8 245,272 - GFF3750 0.69 -0.3 245,272 - GFF3750 0.69 +0.7 245,272 - GFF3750 0.69 +0.5 245,272 - GFF3750 0.69 -0.2 245,272 - GFF3750 0.69 -0.8 245,272 - GFF3750 0.69 -1.0 245,334 + GFF3750 0.85 +0.3 245,334 + GFF3750 0.85 +0.0 245,334 + GFF3750 0.85 +1.3 245,335 - GFF3750 0.85 -0.1 245,335 - GFF3750 0.85 +0.6 245,335 - GFF3750 0.85 -0.6 245,384 + -0.4 245,384 + -0.9 245,385 - -0.2 245,385 - -0.5 245,385 - -1.7 245,385 - -0.1 245,419 + -1.5 245,419 + -0.5 245,420 - -0.7 245,491 + +0.4 245,491 + -0.6 245,491 + -0.9 245,492 - +0.7 245,492 - -0.9 245,492 - +0.3 245,492 - -1.0 245,492 - -0.5 245,539 + GFF3751 0.13 +0.5 245,539 + GFF3751 0.13 -0.5 245,540 - GFF3751 0.13 -0.7 245,689 + GFF3751 0.32 -0.1 245,689 + GFF3751 0.32 -0.1 245,689 + GFF3751 0.32 +0.9 245,689 + GFF3751 0.32 -0.4 245,690 - GFF3751 0.32 -0.3 245,690 - GFF3751 0.32 -0.7 245,690 - GFF3751 0.32 +0.4 245,690 - GFF3751 0.32 +0.5 245,690 - GFF3751 0.32 -0.5 245,690 - GFF3751 0.32 -0.4 245,914 + GFF3751 0.61 -1.0 246,091 + GFF3751 0.85 -0.8 246,091 + GFF3751 0.85 -0.0 246,091 + GFF3751 0.85 +0.1 246,091 + GFF3751 0.85 -0.2 246,092 - GFF3751 0.85 -0.9 246,092 - GFF3751 0.85 -0.3 246,092 - GFF3751 0.85 -0.2 246,132 + GFF3751 0.90 -0.5 246,133 - -0.2 246,133 - -0.1 246,372 + GFF3752 0.18 -0.6 246,372 + GFF3752 0.18 +0.1 246,372 + GFF3752 0.18 +0.6
Or see this region's nucleotide sequence