Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF371 and GFF372 are separated by 5 nucleotides GFF372 and GFF373 are separated by 45 nucleotides GFF373 and GFF374 are separated by 10 nucleotides GFF374 and GFF375 are separated by 66 nucleotides
GFF371 - RNA-binding protein YhbY, at 402,678 to 403,082
GFF371
GFF372 - PMID: 11481431, at 403,088 to 403,843
GFF372
GFF373 - Probable transmembrane protein, at 403,889 to 404,305
GFF373
GFF374 - Transcription elongation factor GreA, at 404,316 to 404,792
GFF374
GFF375 - hypothetical protein, at 404,859 to 405,728
GFF375
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.943 kb on - strand, within GFF371 at 403.114 kb on + strand at 403.114 kb on + strand at 403.115 kb on - strand at 403.115 kb on - strand at 403.143 kb on - strand at 403.154 kb on + strand at 403.155 kb on - strand at 403.169 kb on + strand, within GFF372 at 403.170 kb on - strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.361 kb on - strand, within GFF372 at 403.451 kb on + strand, within GFF372 at 403.499 kb on + strand, within GFF372 at 403.500 kb on - strand, within GFF372 at 403.539 kb on - strand, within GFF372 at 403.575 kb on - strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.829 kb on + strand at 403.829 kb on + strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.023 kb on - strand, within GFF373 at 404.023 kb on - strand, within GFF373 at 404.323 kb on + strand at 404.323 kb on + strand at 404.323 kb on + strand at 404.324 kb on - strand at 404.324 kb on - strand at 404.344 kb on + strand at 404.470 kb on - strand, within GFF374 at 404.470 kb on - strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.650 kb on + strand, within GFF374 at 404.650 kb on + strand, within GFF374 at 404.651 kb on - strand, within GFF374 at 404.808 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.062 kb on - strand, within GFF375 at 405.062 kb on - strand, within GFF375 at 405.112 kb on + strand, within GFF375 at 405.113 kb on - strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.176 kb on - strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 402,942 + GFF371 0.65 -2.1 402,942 + GFF371 0.65 -2.9 402,942 + GFF371 0.65 -1.1 402,942 + GFF371 0.65 -2.0 402,943 - GFF371 0.65 -2.2 403,114 + -0.4 403,114 + -1.6 403,115 - -1.6 403,115 - -3.5 403,143 - -1.2 403,154 + -1.9 403,155 - -0.4 403,169 + GFF372 0.11 -1.6 403,170 - GFF372 0.11 -2.7 403,346 + GFF372 0.34 -1.7 403,346 + GFF372 0.34 -3.6 403,346 + GFF372 0.34 -2.3 403,347 - GFF372 0.34 -1.2 403,347 - GFF372 0.34 -1.6 403,347 - GFF372 0.34 -2.1 403,361 - GFF372 0.36 -2.0 403,451 + GFF372 0.48 -1.4 403,499 + GFF372 0.54 -1.0 403,500 - GFF372 0.54 -0.7 403,539 - GFF372 0.60 -3.0 403,575 - GFF372 0.64 -0.6 403,592 + GFF372 0.67 -2.9 403,592 + GFF372 0.67 -2.6 403,593 - GFF372 0.67 -3.1 403,593 - GFF372 0.67 -3.3 403,631 + GFF372 0.72 -3.1 403,631 + GFF372 0.72 -2.1 403,664 + GFF372 0.76 -2.7 403,664 + GFF372 0.76 -2.5 403,665 - GFF372 0.76 -2.9 403,665 - GFF372 0.76 -2.3 403,665 - GFF372 0.76 -2.9 403,665 - GFF372 0.76 -3.6 403,694 + GFF372 0.80 -3.1 403,694 + GFF372 0.80 -2.7 403,694 + GFF372 0.80 -1.7 403,694 + GFF372 0.80 -1.6 403,694 + GFF372 0.80 -3.0 403,695 - GFF372 0.80 -2.7 403,695 - GFF372 0.80 -3.7 403,695 - GFF372 0.80 -2.2 403,695 - GFF372 0.80 -1.7 403,829 + -1.4 403,829 + -0.4 403,886 - +0.4 403,886 - +0.1 403,886 - -0.5 403,953 + GFF373 0.15 -0.3 403,953 + GFF373 0.15 -0.4 403,953 + GFF373 0.15 +0.7 403,953 + GFF373 0.15 +0.2 403,953 + GFF373 0.15 -0.4 403,953 + GFF373 0.15 +1.1 403,953 + GFF373 0.15 +0.0 403,953 + GFF373 0.15 +0.2 403,953 + GFF373 0.15 +0.4 403,953 + GFF373 0.15 +0.5 403,953 + GFF373 0.15 -0.4 403,953 + GFF373 0.15 -0.9 403,954 - GFF373 0.16 -0.3 403,954 - GFF373 0.16 -2.3 403,954 - GFF373 0.16 -1.1 403,954 - GFF373 0.16 -1.3 403,954 - GFF373 0.16 +0.6 403,954 - GFF373 0.16 -1.2 403,954 - GFF373 0.16 +0.3 403,954 - GFF373 0.16 +1.6 403,954 - GFF373 0.16 +0.3 403,954 - GFF373 0.16 +0.3 403,954 - GFF373 0.16 +2.1 403,954 - GFF373 0.16 -0.6 403,954 - GFF373 0.16 -0.1 403,954 - GFF373 0.16 -0.6 404,022 + GFF373 0.32 +0.2 404,022 + GFF373 0.32 +0.2 404,022 + GFF373 0.32 -0.9 404,022 + GFF373 0.32 +0.2 404,022 + GFF373 0.32 -0.1 404,022 + GFF373 0.32 -0.4 404,022 + GFF373 0.32 -0.3 404,022 + GFF373 0.32 -0.7 404,022 + GFF373 0.32 -0.1 404,023 - GFF373 0.32 -0.5 404,023 - GFF373 0.32 +1.1 404,323 + -0.2 404,323 + +0.6 404,323 + -1.0 404,324 - +0.3 404,324 - -0.5 404,344 + -0.6 404,470 - GFF374 0.32 -0.7 404,470 - GFF374 0.32 -0.7 404,479 + GFF374 0.34 +0.5 404,479 + GFF374 0.34 -0.4 404,479 + GFF374 0.34 +0.1 404,650 + GFF374 0.70 -0.3 404,650 + GFF374 0.70 -0.3 404,651 - GFF374 0.70 +0.3 404,808 + +1.6 404,920 + +0.2 404,920 + -0.7 404,920 + -1.0 404,920 + -0.4 404,920 + +0.0 404,920 + +1.6 404,920 + +0.8 404,920 + -2.7 404,920 + -0.5 404,920 + -2.0 404,921 - -1.4 404,921 - -0.7 404,921 - -1.6 404,921 - -1.2 404,921 - -1.8 404,962 + GFF375 0.12 -0.7 404,962 + GFF375 0.12 +0.6 404,962 + GFF375 0.12 -0.4 404,962 + GFF375 0.12 -1.7 404,962 + GFF375 0.12 -1.1 404,962 + GFF375 0.12 +0.0 404,962 + GFF375 0.12 -0.4 404,962 + GFF375 0.12 -0.9 404,962 + GFF375 0.12 -0.7 404,962 + GFF375 0.12 -1.0 404,962 + GFF375 0.12 -1.9 404,962 + GFF375 0.12 +0.6 404,962 + GFF375 0.12 -0.2 404,962 + GFF375 0.12 -0.4 404,962 + GFF375 0.12 +0.5 404,962 + GFF375 0.12 -0.3 404,962 + GFF375 0.12 -0.7 404,962 + GFF375 0.12 +0.2 404,962 + GFF375 0.12 -1.3 404,962 + GFF375 0.12 +0.6 404,962 + GFF375 0.12 +0.0 404,962 + GFF375 0.12 +0.6 404,962 + GFF375 0.12 -0.1 404,962 + GFF375 0.12 +0.6 404,963 - GFF375 0.12 -0.9 404,963 - GFF375 0.12 -0.9 404,963 - GFF375 0.12 -0.4 404,963 - GFF375 0.12 -0.3 404,963 - GFF375 0.12 +1.0 404,963 - GFF375 0.12 -0.7 404,963 - GFF375 0.12 -1.6 404,963 - GFF375 0.12 -2.8 404,963 - GFF375 0.12 +0.7 404,963 - GFF375 0.12 -1.1 404,963 - GFF375 0.12 -0.3 404,963 - GFF375 0.12 -0.2 404,963 - GFF375 0.12 +0.2 404,963 - GFF375 0.12 -1.2 404,963 - GFF375 0.12 -0.8 404,963 - GFF375 0.12 -0.9 404,963 - GFF375 0.12 +0.3 404,963 - GFF375 0.12 -0.7 404,963 - GFF375 0.12 -0.8 404,963 - GFF375 0.12 -1.7 404,963 - GFF375 0.12 -1.7 404,963 - GFF375 0.12 -1.7 404,963 - GFF375 0.12 +0.5 404,963 - GFF375 0.12 -1.4 405,061 + GFF375 0.23 +0.2 405,061 + GFF375 0.23 +0.0 405,061 + GFF375 0.23 -1.7 405,062 - GFF375 0.23 +0.3 405,062 - GFF375 0.23 -0.4 405,112 + GFF375 0.29 -0.7 405,113 - GFF375 0.29 -0.2 405,175 + GFF375 0.36 -1.0 405,175 + GFF375 0.36 +0.8 405,175 + GFF375 0.36 +0.2 405,175 + GFF375 0.36 -0.9 405,176 - GFF375 0.36 +1.0 405,295 + GFF375 0.50 +0.5 405,295 + GFF375 0.50 -0.7 405,295 + GFF375 0.50 +0.0 405,295 + GFF375 0.50 -1.4 405,295 + GFF375 0.50 -0.4 405,295 + GFF375 0.50 +0.2 405,295 + GFF375 0.50 -1.0 405,296 - GFF375 0.50 -1.2 405,296 - GFF375 0.50 -0.4 405,296 - GFF375 0.50 -0.2 405,296 - GFF375 0.50 -0.4 405,296 - GFF375 0.50 -0.1 405,296 - GFF375 0.50 +0.4
Or see this region's nucleotide sequence