Strain Fitness in Variovorax sp. SCN45 around GFF3654

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3653 and GFF3654 are separated by 62 nucleotidesGFF3654 and GFF3655 are separated by 106 nucleotidesGFF3655 and GFF3656 are separated by 111 nucleotides GFF3653 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 156,359 to 158,170 GFF3653 GFF3654 - DUF1275 domain-containing protein, at 158,233 to 158,949 GFF3654 GFF3655 - no description, at 159,056 to 159,433 GFF3655 GFF3656 - hypothetical protein, at 159,545 to 160,009 GFF3656 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 157.281 kb on - strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.412 kb on + strand, within GFF3653at 157.413 kb on - strand, within GFF3653at 157.413 kb on - strand, within GFF3653at 157.413 kb on - strand, within GFF3653at 157.413 kb on - strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.421 kb on + strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.422 kb on - strand, within GFF3653at 157.736 kb on + strand, within GFF3653at 157.736 kb on + strand, within GFF3653at 157.737 kb on - strand, within GFF3653at 157.737 kb on - strand, within GFF3653at 157.737 kb on - strand, within GFF3653at 157.737 kb on - strand, within GFF3653at 157.737 kb on - strand, within GFF3653at 157.770 kb on + strand, within GFF3653at 157.770 kb on + strand, within GFF3653at 157.771 kb on - strand, within GFF3653at 157.850 kb on + strand, within GFF3653at 157.850 kb on + strand, within GFF3653at 157.850 kb on + strand, within GFF3653at 157.850 kb on + strand, within GFF3653at 157.850 kb on + strand, within GFF3653at 157.851 kb on - strand, within GFF3653at 157.851 kb on - strand, within GFF3653at 157.851 kb on - strand, within GFF3653at 157.895 kb on + strand, within GFF3653at 157.895 kb on + strand, within GFF3653at 157.895 kb on + strand, within GFF3653at 157.895 kb on + strand, within GFF3653at 157.896 kb on - strand, within GFF3653at 157.896 kb on - strand, within GFF3653at 157.896 kb on - strand, within GFF3653at 158.869 kb on + strand, within GFF3654at 158.869 kb on + strand, within GFF3654at 158.870 kb on - strand, within GFF3654at 158.934 kb on - strandat 158.958 kb on + strandat 158.958 kb on + strandat 158.959 kb on - strandat 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.431 kb on + strandat 159.432 kb on - strandat 159.450 kb on + strandat 159.451 kb on - strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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157,281 - GFF3653 0.51 +0.4
157,412 + GFF3653 0.58 +0.9
157,412 + GFF3653 0.58 +0.4
157,412 + GFF3653 0.58 +0.5
157,412 + GFF3653 0.58 +0.2
157,412 + GFF3653 0.58 +1.3
157,412 + GFF3653 0.58 +0.3
157,412 + GFF3653 0.58 -0.6
157,412 + GFF3653 0.58 +0.3
157,412 + GFF3653 0.58 +0.5
157,413 - GFF3653 0.58 +0.7
157,413 - GFF3653 0.58 -0.4
157,413 - GFF3653 0.58 +0.5
157,413 - GFF3653 0.58 +0.1
157,421 + GFF3653 0.59 +0.3
157,421 + GFF3653 0.59 +0.5
157,421 + GFF3653 0.59 +0.9
157,421 + GFF3653 0.59 +0.5
157,421 + GFF3653 0.59 -0.3
157,421 + GFF3653 0.59 +0.1
157,421 + GFF3653 0.59 +1.3
157,421 + GFF3653 0.59 -1.3
157,422 - GFF3653 0.59 -1.1
157,422 - GFF3653 0.59 +0.5
157,422 - GFF3653 0.59 -0.5
157,422 - GFF3653 0.59 +0.0
157,422 - GFF3653 0.59 -0.2
157,422 - GFF3653 0.59 +1.1
157,422 - GFF3653 0.59 +0.0
157,422 - GFF3653 0.59 +1.1
157,736 + GFF3653 0.76 +0.2
157,736 + GFF3653 0.76 -0.4
157,737 - GFF3653 0.76 +0.1
157,737 - GFF3653 0.76 -0.1
157,737 - GFF3653 0.76 -0.1
157,737 - GFF3653 0.76 +0.3
157,737 - GFF3653 0.76 +0.1
157,770 + GFF3653 0.78 +0.4
157,770 + GFF3653 0.78 +0.2
157,771 - GFF3653 0.78 -0.3
157,850 + GFF3653 0.82 +0.1
157,850 + GFF3653 0.82 +0.9
157,850 + GFF3653 0.82 +0.6
157,850 + GFF3653 0.82 -0.2
157,850 + GFF3653 0.82 -0.0
157,851 - GFF3653 0.82 +0.1
157,851 - GFF3653 0.82 +0.5
157,851 - GFF3653 0.82 +0.7
157,895 + GFF3653 0.85 -0.4
157,895 + GFF3653 0.85 +2.5
157,895 + GFF3653 0.85 +0.9
157,895 + GFF3653 0.85 -0.3
157,896 - GFF3653 0.85 -0.8
157,896 - GFF3653 0.85 +0.5
157,896 - GFF3653 0.85 +1.3
158,869 + GFF3654 0.89 +0.5
158,869 + GFF3654 0.89 -0.0
158,870 - GFF3654 0.89 +0.5
158,934 - -1.6
158,958 + -0.3
158,958 + -0.0
158,959 - -0.3
159,140 + GFF3655 0.22 -0.7
159,140 + GFF3655 0.22 -0.9
159,140 + GFF3655 0.22 -0.6
159,140 + GFF3655 0.22 -0.5
159,140 + GFF3655 0.22 +0.8
159,140 + GFF3655 0.22 -0.1
159,141 - GFF3655 0.22 +0.6
159,141 - GFF3655 0.22 -0.5
159,141 - GFF3655 0.22 -0.3
159,141 - GFF3655 0.22 +1.5
159,141 - GFF3655 0.22 +0.2
159,141 - GFF3655 0.22 +0.6
159,141 - GFF3655 0.22 +0.3
159,431 + +0.4
159,432 - -0.2
159,450 + -0.4
159,451 - -0.1
159,565 + -0.6
159,565 + -0.9
159,565 + -0.3
159,565 + -0.1
159,565 + +0.2
159,565 + +0.7
159,565 + +0.3
159,565 + -0.3
159,566 - -0.4
159,566 - -0.9
159,566 - -0.0
159,566 - -0.6
159,566 - -0.1
159,926 + GFF3656 0.82 -0.4
159,926 + GFF3656 0.82 -0.8
159,926 + GFF3656 0.82 +0.3
159,926 + GFF3656 0.82 +0.2
159,926 + GFF3656 0.82 -0.6
159,926 + GFF3656 0.82 -1.6
159,926 + GFF3656 0.82 -0.2
159,926 + GFF3656 0.82 +0.2
159,926 + GFF3656 0.82 -0.7
159,926 + GFF3656 0.82 -0.7
159,926 + GFF3656 0.82 -1.9
159,926 + GFF3656 0.82 +0.1
159,927 - GFF3656 0.82 +1.1
159,927 - GFF3656 0.82 +0.3
159,927 - GFF3656 0.82 -0.1
159,927 - GFF3656 0.82 -1.1
159,927 - GFF3656 0.82 -0.4
159,927 - GFF3656 0.82 -0.8
159,927 - GFF3656 0.82 -0.4
159,927 - GFF3656 0.82 -2.7
159,927 - GFF3656 0.82 -0.8
159,927 - GFF3656 0.82 +0.2
159,927 - GFF3656 0.82 -1.7

Or see this region's nucleotide sequence