Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3646 and GFF3647 overlap by 4 nucleotides GFF3647 and GFF3648 are separated by 155 nucleotides GFF3648 and GFF3649 are separated by 51 nucleotides GFF3649 and GFF3650 are separated by 155 nucleotides
GFF3646 - Histone acetyltransferase HPA2 and related acetyltransferases, at 152,413 to 153,000
GFF3646
GFF3647 - Cytochrome b, at 152,997 to 153,710
GFF3647
GFF3648 - putative c'cytochrome, at 153,866 to 154,312
GFF3648
GFF3649 - C-type cytochrome biogenesis protein ResA (thioredoxin), at 154,364 to 154,861
GFF3649
GFF3650 - FIG00932140: hypothetical protein, at 155,017 to 155,502
GFF3650
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.023 kb on - strand at 153.023 kb on - strand at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.207 kb on + strand, within GFF3647 at 153.207 kb on + strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.542 kb on - strand, within GFF3647 at 153.753 kb on + strand at 153.753 kb on + strand at 153.753 kb on + strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 154.037 kb on + strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.310 kb on + strand at 154.310 kb on + strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.428 kb on + strand, within GFF3649 at 154.428 kb on + strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.851 kb on + strand at 154.851 kb on + strand at 154.851 kb on + strand at 154.852 kb on - strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 152,889 - GFF3646 0.81 +0.6 152,889 - GFF3646 0.81 +1.0 152,889 - GFF3646 0.81 -0.1 152,889 - GFF3646 0.81 +0.8 153,000 + +0.9 153,000 + -0.7 153,000 + -0.9 153,000 + +0.0 153,000 + -0.1 153,000 + -1.3 153,000 + -0.4 153,001 - +0.1 153,001 - -0.9 153,001 - +0.2 153,001 - -1.1 153,001 - -0.9 153,001 - -0.3 153,001 - -0.2 153,001 - -0.2 153,001 - +0.0 153,001 - +0.7 153,001 - -0.3 153,001 - -0.2 153,001 - +0.3 153,022 + +0.1 153,022 + -1.5 153,023 - -0.8 153,023 - +0.2 153,120 + GFF3647 0.17 +0.2 153,120 + GFF3647 0.17 +0.3 153,120 + GFF3647 0.17 +0.3 153,120 + GFF3647 0.17 -0.9 153,120 + GFF3647 0.17 -3.0 153,120 + GFF3647 0.17 -1.1 153,120 + GFF3647 0.17 -1.3 153,121 - GFF3647 0.17 +0.2 153,121 - GFF3647 0.17 +0.3 153,121 - GFF3647 0.17 -0.1 153,121 - GFF3647 0.17 -1.2 153,121 - GFF3647 0.17 -0.0 153,121 - GFF3647 0.17 -1.1 153,121 - GFF3647 0.17 +0.5 153,178 + GFF3647 0.25 -1.1 153,178 + GFF3647 0.25 -0.3 153,178 + GFF3647 0.25 -1.0 153,179 - GFF3647 0.25 -0.9 153,179 - GFF3647 0.25 -0.1 153,179 - GFF3647 0.25 +1.4 153,179 - GFF3647 0.25 +0.2 153,179 - GFF3647 0.25 +0.3 153,207 + GFF3647 0.29 -0.9 153,207 + GFF3647 0.29 +0.1 153,208 - GFF3647 0.30 -0.2 153,208 - GFF3647 0.30 -0.2 153,208 - GFF3647 0.30 +0.3 153,208 - GFF3647 0.30 -0.1 153,208 - GFF3647 0.30 -0.7 153,208 - GFF3647 0.30 -1.1 153,436 + GFF3647 0.61 -0.5 153,436 + GFF3647 0.61 -0.1 153,436 + GFF3647 0.61 +0.9 153,436 + GFF3647 0.61 -0.6 153,437 - GFF3647 0.62 -1.1 153,437 - GFF3647 0.62 -0.7 153,437 - GFF3647 0.62 -0.3 153,437 - GFF3647 0.62 +0.3 153,437 - GFF3647 0.62 +0.1 153,460 + GFF3647 0.65 +0.5 153,460 + GFF3647 0.65 +1.5 153,460 + GFF3647 0.65 +0.4 153,460 + GFF3647 0.65 +0.0 153,460 + GFF3647 0.65 +0.0 153,460 + GFF3647 0.65 +0.4 153,460 + GFF3647 0.65 +0.4 153,460 + GFF3647 0.65 +1.0 153,461 - GFF3647 0.65 +0.1 153,461 - GFF3647 0.65 -0.9 153,461 - GFF3647 0.65 -0.2 153,461 - GFF3647 0.65 -0.6 153,541 + GFF3647 0.76 -0.0 153,541 + GFF3647 0.76 +0.4 153,541 + GFF3647 0.76 -1.1 153,542 - GFF3647 0.76 -0.7 153,753 + -1.9 153,753 + -0.9 153,753 + +0.9 153,754 - -0.4 153,754 - -1.3 153,754 - -0.9 153,754 - -0.1 153,791 + -1.1 153,791 + +0.6 153,791 + -0.3 153,791 + -0.5 153,791 + -0.1 153,791 + +0.7 153,791 + -1.5 153,792 - -0.5 153,792 - -0.0 153,792 - -1.1 153,792 - -1.3 153,815 + +0.7 153,815 + +0.4 153,815 + +0.9 153,815 + -0.9 153,815 + -0.2 153,815 + +0.1 153,815 + +0.6 153,815 + +1.0 153,815 + -0.4 153,816 - +0.4 153,816 - -1.9 153,816 - -0.0 153,816 - +0.5 153,962 + GFF3648 0.21 +0.1 153,962 + GFF3648 0.21 -0.6 153,962 + GFF3648 0.21 -0.0 153,962 + GFF3648 0.21 +0.3 153,962 + GFF3648 0.21 -0.6 153,963 - GFF3648 0.22 -0.2 153,963 - GFF3648 0.22 +0.1 153,963 - GFF3648 0.22 +0.2 153,963 - GFF3648 0.22 +0.1 153,963 - GFF3648 0.22 -0.2 153,963 - GFF3648 0.22 +0.6 153,963 - GFF3648 0.22 +0.6 154,037 + GFF3648 0.38 -0.0 154,038 - GFF3648 0.38 +0.3 154,038 - GFF3648 0.38 +0.2 154,310 + -0.6 154,310 + +0.2 154,311 - -1.1 154,311 - -0.6 154,311 - +1.3 154,311 - -1.7 154,311 - -0.5 154,428 + GFF3649 0.13 +1.1 154,428 + GFF3649 0.13 -0.6 154,429 - GFF3649 0.13 -0.7 154,429 - GFF3649 0.13 +0.1 154,464 + GFF3649 0.20 +0.1 154,464 + GFF3649 0.20 -0.9 154,464 + GFF3649 0.20 -1.3 154,464 + GFF3649 0.20 -0.7 154,464 + GFF3649 0.20 -0.2 154,464 + GFF3649 0.20 -0.5 154,464 + GFF3649 0.20 -1.5 154,464 + GFF3649 0.20 -0.5 154,464 + GFF3649 0.20 -2.2 154,464 + GFF3649 0.20 -0.1 154,464 + GFF3649 0.20 -2.6 154,464 + GFF3649 0.20 -0.2 154,464 + GFF3649 0.20 +0.5 154,464 + GFF3649 0.20 +0.5 154,464 + GFF3649 0.20 +0.9 154,464 + GFF3649 0.20 -0.1 154,465 - GFF3649 0.20 -1.6 154,465 - GFF3649 0.20 +0.3 154,465 - GFF3649 0.20 -0.9 154,465 - GFF3649 0.20 +0.2 154,465 - GFF3649 0.20 -1.5 154,465 - GFF3649 0.20 -0.7 154,465 - GFF3649 0.20 -1.3 154,465 - GFF3649 0.20 -0.9 154,465 - GFF3649 0.20 -2.1 154,572 + GFF3649 0.42 -1.0 154,572 + GFF3649 0.42 -0.7 154,572 + GFF3649 0.42 +0.2 154,572 + GFF3649 0.42 -1.1 154,573 - GFF3649 0.42 -1.0 154,573 - GFF3649 0.42 +0.9 154,573 - GFF3649 0.42 -1.1 154,573 - GFF3649 0.42 +0.5 154,573 - GFF3649 0.42 -1.6 154,573 - GFF3649 0.42 -0.9 154,573 - GFF3649 0.42 -0.5 154,573 - GFF3649 0.42 +2.5 154,573 - GFF3649 0.42 +0.4 154,573 - GFF3649 0.42 +1.9 154,573 - GFF3649 0.42 +1.5 154,587 + GFF3649 0.45 -0.5 154,587 + GFF3649 0.45 +0.3 154,587 + GFF3649 0.45 -1.0 154,587 + GFF3649 0.45 +0.5 154,587 + GFF3649 0.45 -1.1 154,587 + GFF3649 0.45 -0.4 154,587 + GFF3649 0.45 +0.3 154,587 + GFF3649 0.45 -0.9 154,587 + GFF3649 0.45 -0.9 154,587 + GFF3649 0.45 -1.9 154,587 + GFF3649 0.45 -0.1 154,588 - GFF3649 0.45 +1.9 154,588 - GFF3649 0.45 +2.1 154,588 - GFF3649 0.45 -0.1 154,588 - GFF3649 0.45 -1.1 154,588 - GFF3649 0.45 +0.1 154,588 - GFF3649 0.45 -2.3 154,588 - GFF3649 0.45 -0.7 154,588 - GFF3649 0.45 +1.1 154,588 - GFF3649 0.45 -1.1 154,614 + GFF3649 0.50 -1.5 154,614 + GFF3649 0.50 -1.0 154,615 - GFF3649 0.50 -0.9 154,615 - GFF3649 0.50 +0.1 154,615 - GFF3649 0.50 -0.9 154,629 + GFF3649 0.53 +0.3 154,629 + GFF3649 0.53 -0.9 154,629 + GFF3649 0.53 -0.4 154,629 + GFF3649 0.53 -0.9 154,629 + GFF3649 0.53 +0.1 154,629 + GFF3649 0.53 -1.7 154,629 + GFF3649 0.53 -1.7 154,630 - GFF3649 0.53 -0.5 154,630 - GFF3649 0.53 -0.9 154,630 - GFF3649 0.53 -0.2 154,630 - GFF3649 0.53 -0.5 154,630 - GFF3649 0.53 -1.6 154,630 - GFF3649 0.53 -0.1 154,630 - GFF3649 0.53 -0.3 154,630 - GFF3649 0.53 -1.1 154,630 - GFF3649 0.53 -1.8 154,630 - GFF3649 0.53 -0.8 154,638 + GFF3649 0.55 -0.1 154,638 + GFF3649 0.55 +1.1 154,638 + GFF3649 0.55 -2.1 154,638 + GFF3649 0.55 +1.5 154,638 + GFF3649 0.55 -0.1 154,639 - GFF3649 0.55 +0.8 154,639 - GFF3649 0.55 -0.7 154,639 - GFF3649 0.55 -0.8 154,639 - GFF3649 0.55 -1.4 154,639 - GFF3649 0.55 -1.9 154,800 + GFF3649 0.88 +0.3 154,800 + GFF3649 0.88 -1.1 154,800 + GFF3649 0.88 -0.7 154,800 + GFF3649 0.88 -0.6 154,800 + GFF3649 0.88 -1.5 154,800 + GFF3649 0.88 +0.3 154,800 + GFF3649 0.88 +1.2 154,800 + GFF3649 0.88 -0.7 154,800 + GFF3649 0.88 -0.5 154,800 + GFF3649 0.88 -1.1 154,801 - GFF3649 0.88 +0.9 154,801 - GFF3649 0.88 -0.9 154,801 - GFF3649 0.88 -1.9 154,801 - GFF3649 0.88 +0.1 154,801 - GFF3649 0.88 -0.4 154,801 - GFF3649 0.88 -1.2 154,801 - GFF3649 0.88 -0.6 154,851 + -0.6 154,851 + -2.0 154,851 + -0.1 154,852 - -0.9 154,869 + +0.6 154,869 + -0.5 154,869 + -0.8 154,869 + -0.2 154,869 + +0.2 154,870 - +0.2 154,870 - -0.5 154,870 - -0.3 154,892 + +0.9
Or see this region's nucleotide sequence