Strain Fitness in Variovorax sp. SCN45 around GFF3615

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
127,615	+		GFF3613	0.36	-0.0
127,616	-		GFF3613	0.36	-0.9
127,616	-		GFF3613	0.36	+0.9
127,616	-		GFF3613	0.36	+0.0
127,616	-		GFF3613	0.36	-0.8
127,616	-		GFF3613	0.36	-0.4
127,616	-		GFF3613	0.36	-0.8
127,711	+		GFF3613	0.56	+0.1
127,712	-		GFF3613	0.57	-0.3
127,712	-		GFF3613	0.57	-0.7
127,714	+		GFF3613	0.57	-1.1
127,714	+		GFF3613	0.57	-0.1
127,714	+		GFF3613	0.57	-0.1
127,715	-		GFF3613	0.57	-0.0
127,715	-		GFF3613	0.57	-0.0
127,715	-		GFF3613	0.57	-0.2
127,945	-				+1.0
128,114	-		GFF3614	0.29	-0.9
128,161	+		GFF3614	0.36	+0.3
128,479	+		GFF3614	0.85	+0.9
128,479	+		GFF3614	0.85	-0.6
128,479	+		GFF3614	0.85	-1.1
128,480	-		GFF3614	0.85	-0.7
128,480	-		GFF3614	0.85	-0.2
128,480	-		GFF3614	0.85	-0.9
128,492	-		GFF3614	0.87	-0.2
128,492	-		GFF3614	0.87	-0.0
128,623	+				-1.0
128,623	+				-0.5
128,623	+				+0.1
128,623	+				-1.2
128,624	-				-0.6
128,624	-				-0.2
128,624	-				-2.7
128,624	-				-0.1
128,624	-				+0.9
128,624	-				-1.9
128,861	-		GFF3615	0.37	-0.3
128,869	+		GFF3615	0.38	-0.5
128,869	+		GFF3615	0.38	-0.9
128,869	+		GFF3615	0.38	-2.2
128,869	+		GFF3615	0.38	-0.3
128,869	+		GFF3615	0.38	-0.7
128,869	+		GFF3615	0.38	-0.9
128,869	+		GFF3615	0.38	-0.7
128,870	-		GFF3615	0.38	-0.8
128,870	-		GFF3615	0.38	+1.9
128,870	-		GFF3615	0.38	-0.9
128,870	-		GFF3615	0.38	-2.2
128,870	-		GFF3615	0.38	-0.4
129,232	+		GFF3615	0.87	-0.5
129,232	+		GFF3615	0.87	-0.8
129,232	+		GFF3615	0.87	-0.5
129,232	+		GFF3615	0.87	+0.3
129,233	-		GFF3615	0.87	-0.7
129,334	+				-0.4
129,334	+				+0.2
129,334	+				-1.1
129,335	-				-0.5
129,335	-				+0.3
129,335	-				-1.7
129,335	-				-1.1
129,335	-				+0.1
129,364	-				-0.7
129,380	+				+0.0
129,380	+				-1.0
129,380	+				+0.2
129,380	+				+1.0
129,380	+				-0.2
129,380	+				-0.4
129,380	+				-2.1
129,380	+				-0.8
129,380	+				-0.2
129,380	+				-0.7
129,381	-				-0.7
129,381	-				-0.9
129,381	-				-1.7
129,381	-				-1.6
129,381	-				-0.5
129,381	-				-1.0
129,381	-				+0.7
129,425	+				-0.7
129,425	+				-0.1
129,425	+				-1.0
129,428	+				-0.6
129,428	+				-2.0
129,428	+				+0.2
129,428	+				+1.3
129,428	+				-1.9
129,429	-				-0.9
129,429	-				+0.3
129,429	-				-1.6
129,429	-				-2.1
129,429	-				-0.5
129,455	+				-0.1
129,455	+				+0.4
129,455	+				-1.2
129,455	+				-0.6
129,455	+				-0.0
129,455	+				-0.4
129,456	-				+0.4
129,456	-				-0.5
129,456	-				+0.5
129,456	-				-0.5
129,456	-				-0.9
129,456	-				-0.7
129,456	-				-1.4
129,456	-				-0.7
129,520	+		GFF3616	0.20	-0.1
129,593	+		GFF3616	0.32	-0.0
129,593	+		GFF3616	0.32	-0.6
129,881	+		GFF3616	0.79	-0.2
129,882	-		GFF3616	0.79	-0.4
129,882	-		GFF3616	0.79	-0.9
129,890	+		GFF3616	0.81	-0.9
129,890	+		GFF3616	0.81	-1.9
129,890	+		GFF3616	0.81	+0.9
129,890	+		GFF3616	0.81	-0.8
129,890	+		GFF3616	0.81	-1.3
129,890	+		GFF3616	0.81	-0.6
129,890	+		GFF3616	0.81	-0.4
129,890	+		GFF3616	0.81	+1.9
129,890	+		GFF3616	0.81	+0.5
129,890	+		GFF3616	0.81	-0.8
129,890	+		GFF3616	0.81	-1.0
129,890	+		GFF3616	0.81	-0.6
129,890	+		GFF3616	0.81	-0.7
129,890	+		GFF3616	0.81	-0.3
129,890	+		GFF3616	0.81	+0.5
129,891	-		GFF3616	0.81	-1.3
129,891	-		GFF3616	0.81	+1.2
129,891	-		GFF3616	0.81	-2.2
129,891	-		GFF3616	0.81	-1.3
129,891	-		GFF3616	0.81	-1.1
129,891	-		GFF3616	0.81	+0.5
129,891	-		GFF3616	0.81	+0.3
129,891	-		GFF3616	0.81	-0.8
129,891	-		GFF3616	0.81	-1.3
129,935	+		GFF3616	0.88	-0.4
129,935	+		GFF3616	0.88	+0.0
129,935	+		GFF3616	0.88	-0.6
129,935	+		GFF3616	0.88	+0.3
129,935	+		GFF3616	0.88	-0.3
129,935	+		GFF3616	0.88	+0.5
129,935	+		GFF3616	0.88	+0.6
129,935	+		GFF3616	0.88	-0.8
129,935	+		GFF3616	0.88	+0.0
129,935	+		GFF3616	0.88	-0.1
129,935	+		GFF3616	0.88	+0.3
129,935	+		GFF3616	0.88	-0.6
129,935	+		GFF3616	0.88	-0.1
129,935	+		GFF3616	0.88	-0.0
129,935	+		GFF3616	0.88	-1.0
129,936	-		GFF3616	0.88	-2.6
129,936	-		GFF3616	0.88	-2.4
129,936	-		GFF3616	0.88	-0.5
129,936	-		GFF3616	0.88	-1.0
129,936	-		GFF3616	0.88	+0.6
129,936	-		GFF3616	0.88	-0.1
129,936	-		GFF3616	0.88	-0.6
129,936	-		GFF3616	0.88	-0.6
129,936	-		GFF3616	0.88	-1.3
129,936	-		GFF3616	0.88	-0.5
129,936	-		GFF3616	0.88	-0.5
129,936	-		GFF3616	0.88	-1.2
129,936	-		GFF3616	0.88	-1.6
129,936	-		GFF3616	0.88	-0.6
129,936	-		GFF3616	0.88	+1.0
129,936	-		GFF3616	0.88	-0.2
129,954	+				-0.9
129,954	+				-0.6
129,954	+				-1.2
129,955	-				-2.7
130,044	+				-2.1
130,044	+				-0.9
130,044	+				-0.7
130,044	+				-1.7
130,044	+				-0.1
130,044	+				+1.2
130,044	+				-0.7
130,044	+				-1.0
130,044	+				-1.0
130,044	+				-0.1
130,044	+				+0.6
130,044	+				-1.1
130,044	+				-0.3
130,044	+				-0.5
130,044	+				+1.9
130,044	+				-1.7
130,044	+				-1.8
130,045	-				-0.1
130,045	-				+0.1
130,045	-				-0.4
130,045	-				-0.7
130,045	-				-1.1
130,045	-				-0.6
130,045	-				-0.9
130,045	-				-1.0
130,045	-				-0.4
130,045	-				-0.7
130,045	-				-2.2
130,045	-				-1.6
130,045	-				-0.6
130,045	-				-1.7
130,045	-				+0.1
130,045	-				-0.0
130,045	-				+0.4
130,045	-				-1.0
130,050	+				-2.2
130,050	+				-1.1
130,051	-				-1.5
130,051	-				+0.3
130,110	+				-0.7
130,110	+				-1.0
130,110	+				-0.1
130,110	+				-0.2
130,111	-				-0.0
130,111	-				+0.5
130,111	-				-1.5
130,206	+		GFF3617	0.21	-0.9
130,206	+		GFF3617	0.21	-0.1
130,207	-		GFF3617	0.22	-0.8
130,221	+		GFF3617	0.24	-0.5
130,221	+		GFF3617	0.24	-0.9
130,222	-		GFF3617	0.24	+0.9
130,222	-		GFF3617	0.24	-0.9
130,222	-		GFF3617	0.24	-0.8
130,278	+		GFF3617	0.32	+2.5
130,278	+		GFF3617	0.32	-1.2
130,278	+		GFF3617	0.32	-0.2
130,278	+		GFF3617	0.32	-0.6