Strain Fitness in Variovorax sp. SCN45 around GFF3606

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3605 and GFF3606 are separated by 111 nucleotidesGFF3606 and GFF3607 are separated by 14 nucleotidesGFF3607 and GFF3608 are separated by 7 nucleotides GFF3605 - Esterase/lipase, at 118,653 to 119,594 GFF3605 GFF3606 - Similarities with probable transcriptional regulator LumQ, at 119,706 to 120,536 GFF3606 GFF3607 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 120,551 to 121,426 GFF3607 GFF3608 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 121,434 to 122,510 GFF3608 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.750 kb on - strand, within GFF3605at 118.852 kb on - strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 119.066 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.265 kb on + strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.793 kb on + strand, within GFF3606at 119.847 kb on + strand, within GFF3606at 119.847 kb on + strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 120.366 kb on + strand, within GFF3606at 120.367 kb on - strand, within GFF3606at 120.457 kb on - strandat 120.599 kb on + strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.858 kb on - strand, within GFF3607at 120.926 kb on + strand, within GFF3607at 120.926 kb on + strand, within GFF3607at 120.927 kb on - strand, within GFF3607at 121.089 kb on - strand, within GFF3607at 121.089 kb on - strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.320 kb on - strand, within GFF3607at 121.320 kb on - strand, within GFF3607at 121.353 kb on - strandat 121.353 kb on - strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.425 kb on - strandat 121.425 kb on - strandat 121.425 kb on - strandat 121.433 kb on + strandat 121.458 kb on + strandat 121.458 kb on + strandat 121.459 kb on - strandat 121.459 kb on - strandat 121.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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118,750 - GFF3605 0.10 -1.7
118,852 - GFF3605 0.21 -0.5
118,896 + GFF3605 0.26 +1.2
118,896 + GFF3605 0.26 -0.1
118,896 + GFF3605 0.26 -0.1
118,897 - GFF3605 0.26 -0.0
118,897 - GFF3605 0.26 -0.3
118,897 - GFF3605 0.26 +0.4
118,897 - GFF3605 0.26 -0.2
118,897 - GFF3605 0.26 -0.2
118,897 - GFF3605 0.26 +0.2
118,897 - GFF3605 0.26 -0.8
118,897 - GFF3605 0.26 -0.4
118,899 + GFF3605 0.26 +0.5
118,899 + GFF3605 0.26 -0.0
118,899 + GFF3605 0.26 -0.1
118,899 + GFF3605 0.26 -0.6
118,899 + GFF3605 0.26 -0.6
118,899 + GFF3605 0.26 -0.7
118,899 + GFF3605 0.26 -0.9
118,900 - GFF3605 0.26 -0.5
118,900 - GFF3605 0.26 -0.3
118,900 - GFF3605 0.26 -1.3
118,900 - GFF3605 0.26 +0.7
119,066 - GFF3605 0.44 +0.3
119,209 - GFF3605 0.59 -0.2
119,209 - GFF3605 0.59 -0.8
119,209 - GFF3605 0.59 +0.2
119,265 + GFF3605 0.65 +0.3
119,266 - GFF3605 0.65 +1.5
119,266 - GFF3605 0.65 -0.6
119,292 + GFF3605 0.68 +0.1
119,292 + GFF3605 0.68 -0.2
119,292 + GFF3605 0.68 -0.6
119,292 + GFF3605 0.68 +0.8
119,293 - GFF3605 0.68 +0.1
119,293 - GFF3605 0.68 +0.3
119,293 - GFF3605 0.68 -0.3
119,293 - GFF3605 0.68 +0.1
119,307 + GFF3605 0.69 +0.1
119,307 + GFF3605 0.69 +0.0
119,307 + GFF3605 0.69 -0.7
119,307 + GFF3605 0.69 +0.2
119,308 - GFF3605 0.70 +0.3
119,308 - GFF3605 0.70 +0.1
119,308 - GFF3605 0.70 -0.4
119,308 - GFF3605 0.70 +0.3
119,308 - GFF3605 0.70 -0.5
119,308 - GFF3605 0.70 -0.3
119,308 - GFF3605 0.70 +0.1
119,396 + GFF3605 0.79 -0.0
119,396 + GFF3605 0.79 -2.0
119,396 + GFF3605 0.79 -0.3
119,475 + GFF3605 0.87 -0.0
119,475 + GFF3605 0.87 +0.0
119,475 + GFF3605 0.87 -0.2
119,475 + GFF3605 0.87 -1.2
119,476 - GFF3605 0.87 -0.5
119,476 - GFF3605 0.87 -0.1
119,476 - GFF3605 0.87 +0.2
119,793 + GFF3606 0.10 +1.9
119,847 + GFF3606 0.17 -0.7
119,847 + GFF3606 0.17 -0.6
119,848 - GFF3606 0.17 +0.3
119,848 - GFF3606 0.17 -1.3
119,848 - GFF3606 0.17 -0.3
119,848 - GFF3606 0.17 +1.2
120,366 + GFF3606 0.79 +1.2
120,367 - GFF3606 0.80 +0.8
120,457 - -0.3
120,599 + -0.3
120,600 - -2.7
120,600 - -0.1
120,600 - -0.6
120,600 - -0.7
120,858 - GFF3607 0.35 -0.1
120,926 + GFF3607 0.43 -0.3
120,926 + GFF3607 0.43 -1.4
120,927 - GFF3607 0.43 +0.5
121,089 - GFF3607 0.61 +0.6
121,089 - GFF3607 0.61 -0.5
121,091 + GFF3607 0.62 -0.0
121,091 + GFF3607 0.62 +0.7
121,091 + GFF3607 0.62 -0.7
121,091 + GFF3607 0.62 +0.2
121,091 + GFF3607 0.62 -0.1
121,091 + GFF3607 0.62 -0.0
121,091 + GFF3607 0.62 -0.2
121,091 + GFF3607 0.62 -0.7
121,091 + GFF3607 0.62 +0.1
121,091 + GFF3607 0.62 -0.2
121,091 + GFF3607 0.62 +0.1
121,092 - GFF3607 0.62 +0.1
121,092 - GFF3607 0.62 -0.2
121,092 - GFF3607 0.62 -1.9
121,092 - GFF3607 0.62 -0.5
121,320 - GFF3607 0.88 +0.3
121,320 - GFF3607 0.88 -0.2
121,353 - +0.7
121,353 - -0.2
121,424 + -1.8
121,424 + -0.5
121,424 + -0.4
121,424 + -0.1
121,424 + -1.4
121,424 + -0.0
121,424 + +0.6
121,424 + -0.0
121,425 - -0.6
121,425 - +1.9
121,425 - -0.1
121,433 + -0.3
121,458 + +1.5
121,458 + -0.5
121,459 - +1.0
121,459 - -1.6
121,459 - +0.2

Or see this region's nucleotide sequence