Strain Fitness in Variovorax sp. SCN45 around GFF3567

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3565 and GFF3566 are separated by 92 nucleotidesGFF3566 and GFF3567 overlap by 10 nucleotidesGFF3567 and GFF3568 are separated by 33 nucleotides GFF3565 - Acyl-CoA dehydrogenase, at 76,763 to 78,469 GFF3565 GFF3566 - Transcriptional regulator, LysR family, at 78,562 to 79,461 GFF3566 GFF3567 - YihE protein, required for LPS synthesis, at 79,452 to 80,486 GFF3567 GFF3568 - Bll1370 protein, at 80,520 to 81,635 GFF3568 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2 3at 78.522 kb on + strandat 78.523 kb on - strandat 78.558 kb on - strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 79.307 kb on - strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.460 kb on - strandat 79.460 kb on - strandat 79.523 kb on - strandat 79.523 kb on - strandat 79.597 kb on + strand, within GFF3567at 79.597 kb on + strand, within GFF3567at 79.598 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.447 kb on - strandat 80.543 kb on - strandat 80.599 kb on + strandat 80.599 kb on + strandat 80.600 kb on - strandat 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 81.217 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.245 kb on - strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.359 kb on - strand, within GFF3568at 81.457 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.470 kb on - strand, within GFF3568at 81.470 kb on - strand, within GFF3568

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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78,522 + +0.4
78,523 - -0.6
78,558 - +0.6
78,583 + -2.5
78,583 + -0.3
78,583 + +0.7
78,583 + -0.5
78,583 + +0.2
78,583 + -0.2
78,583 + -0.0
78,583 + +1.0
78,583 + -0.5
78,583 + +0.5
78,584 - -0.6
78,584 - +0.2
78,584 - +0.5
78,584 - -0.6
78,584 - +0.3
78,584 - +1.0
78,868 + GFF3566 0.34 -0.2
78,868 + GFF3566 0.34 +0.9
78,868 + GFF3566 0.34 +0.3
78,868 + GFF3566 0.34 +1.1
79,307 - GFF3566 0.83 +0.2
79,366 + GFF3566 0.89 -0.4
79,366 + GFF3566 0.89 -0.5
79,367 - GFF3566 0.89 -0.9
79,367 - GFF3566 0.89 -0.8
79,367 - GFF3566 0.89 +0.0
79,367 - GFF3566 0.89 +0.8
79,460 - -0.2
79,460 - -2.3
79,523 - -0.3
79,523 - +0.1
79,597 + GFF3567 0.14 +0.5
79,597 + GFF3567 0.14 +0.4
79,598 - GFF3567 0.14 +0.9
80,147 - GFF3567 0.67 -1.4
80,147 - GFF3567 0.67 +0.5
80,299 + GFF3567 0.82 +0.3
80,299 + GFF3567 0.82 -0.7
80,300 - GFF3567 0.82 +0.4
80,300 - GFF3567 0.82 +0.0
80,335 + GFF3567 0.85 -0.4
80,335 + GFF3567 0.85 +0.4
80,335 + GFF3567 0.85 +0.4
80,336 - GFF3567 0.85 -0.6
80,336 - GFF3567 0.85 +0.3
80,336 - GFF3567 0.85 +0.3
80,345 - GFF3567 0.86 +0.7
80,345 - GFF3567 0.86 -0.8
80,359 + GFF3567 0.88 -0.6
80,359 + GFF3567 0.88 +0.6
80,359 + GFF3567 0.88 +0.4
80,447 - +1.2
80,543 - +0.2
80,599 + +0.0
80,599 + -0.5
80,600 - -0.5
80,920 + GFF3568 0.36 +0.7
80,920 + GFF3568 0.36 +0.2
80,920 + GFF3568 0.36 -0.1
80,920 + GFF3568 0.36 -0.7
80,920 + GFF3568 0.36 -0.2
80,920 + GFF3568 0.36 +1.0
80,920 + GFF3568 0.36 +0.6
80,921 - GFF3568 0.36 -0.1
80,921 - GFF3568 0.36 +1.5
80,921 - GFF3568 0.36 -0.3
80,921 - GFF3568 0.36 -0.7
80,921 - GFF3568 0.36 -0.6
80,921 - GFF3568 0.36 +1.9
80,921 - GFF3568 0.36 -0.5
80,921 - GFF3568 0.36 -0.5
80,962 + GFF3568 0.40 +0.0
80,962 + GFF3568 0.40 -0.8
80,963 - GFF3568 0.40 +0.0
80,963 - GFF3568 0.40 -0.0
80,963 - GFF3568 0.40 -0.4
80,963 - GFF3568 0.40 -0.1
80,963 - GFF3568 0.40 +0.7
80,963 - GFF3568 0.40 -0.1
80,963 - GFF3568 0.40 +0.2
80,980 + GFF3568 0.41 -0.4
80,980 + GFF3568 0.41 -0.3
80,980 + GFF3568 0.41 -0.8
80,980 + GFF3568 0.41 -0.7
80,981 - GFF3568 0.41 -0.3
80,981 - GFF3568 0.41 -0.6
80,981 - GFF3568 0.41 -1.1
81,217 + GFF3568 0.62 +0.3
81,244 + GFF3568 0.65 -0.0
81,244 + GFF3568 0.65 -0.5
81,244 + GFF3568 0.65 +0.2
81,244 + GFF3568 0.65 +0.4
81,245 - GFF3568 0.65 -1.1
81,253 + GFF3568 0.66 -1.4
81,253 + GFF3568 0.66 -1.3
81,254 - GFF3568 0.66 -0.1
81,254 - GFF3568 0.66 +0.7
81,254 - GFF3568 0.66 +0.1
81,254 - GFF3568 0.66 +0.5
81,352 + GFF3568 0.75 -0.0
81,352 + GFF3568 0.75 +0.2
81,353 - GFF3568 0.75 -0.5
81,353 - GFF3568 0.75 -0.6
81,358 + GFF3568 0.75 -0.0
81,358 + GFF3568 0.75 -0.7
81,359 - GFF3568 0.75 +0.0
81,457 + GFF3568 0.84 +0.1
81,469 + GFF3568 0.85 +3.2
81,469 + GFF3568 0.85 -0.4
81,469 + GFF3568 0.85 -0.1
81,469 + GFF3568 0.85 +0.3
81,469 + GFF3568 0.85 +0.9
81,469 + GFF3568 0.85 +0.3
81,470 - GFF3568 0.85 +0.3
81,470 - GFF3568 0.85 -0.2

Or see this region's nucleotide sequence