Strain Fitness in Variovorax sp. SCN45 around GFF3562

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3561 and GFF3562 are separated by 96 nucleotidesGFF3562 and GFF3563 are separated by 17 nucleotides GFF3561 - Glycosyltransferases involved in cell wall biogenesis, at 72,077 to 73,105 GFF3561 GFF3562 - UDP-glucose 6-dehydrogenase (EC 1.1.1.22), at 73,202 to 74,542 GFF3562 GFF3563 - L-carnitine dehydratase/bile acid-inducible protein F, at 74,560 to 75,684 GFF3563 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.460 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.588 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.846 kb on + strand, within GFF3561at 73.153 kb on + strandat 73.154 kb on - strandat 73.229 kb on + strandat 73.230 kb on - strandat 73.763 kb on + strand, within GFF3562at 73.835 kb on + strand, within GFF3562at 73.835 kb on + strand, within GFF3562at 73.836 kb on - strand, within GFF3562at 73.836 kb on - strand, within GFF3562at 73.988 kb on + strand, within GFF3562at 74.267 kb on + strand, within GFF3562at 74.267 kb on + strand, within GFF3562at 74.268 kb on - strand, within GFF3562at 74.268 kb on - strand, within GFF3562at 74.469 kb on - strandat 74.504 kb on + strandat 74.504 kb on + strandat 74.505 kb on - strandat 74.505 kb on - strandat 74.507 kb on + strandat 74.507 kb on + strandat 74.507 kb on + strandat 74.508 kb on - strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.861 kb on + strand, within GFF3563at 74.975 kb on + strand, within GFF3563at 74.975 kb on + strand, within GFF3563at 74.976 kb on - strand, within GFF3563at 74.976 kb on - strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 75.077 kb on + strand, within GFF3563at 75.078 kb on - strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.500 kb on + strand, within GFF3563at 75.500 kb on + strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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72,342 + GFF3561 0.26 -0.5
72,342 + GFF3561 0.26 +1.1
72,342 + GFF3561 0.26 +0.3
72,342 + GFF3561 0.26 -0.1
72,343 - GFF3561 0.26 -2.0
72,343 - GFF3561 0.26 -1.5
72,343 - GFF3561 0.26 -0.2
72,343 - GFF3561 0.26 -0.2
72,343 - GFF3561 0.26 -0.5
72,343 - GFF3561 0.26 -1.1
72,372 + GFF3561 0.29 -0.2
72,372 + GFF3561 0.29 -0.0
72,372 + GFF3561 0.29 +0.0
72,372 + GFF3561 0.29 -0.1
72,373 - GFF3561 0.29 -0.7
72,373 - GFF3561 0.29 -0.7
72,373 - GFF3561 0.29 -0.3
72,373 - GFF3561 0.29 -2.4
72,373 - GFF3561 0.29 -0.5
72,373 - GFF3561 0.29 +0.9
72,373 - GFF3561 0.29 -1.0
72,373 - GFF3561 0.29 -0.6
72,373 - GFF3561 0.29 +0.4
72,460 - GFF3561 0.37 +1.1
72,520 - GFF3561 0.43 -0.8
72,520 - GFF3561 0.43 -0.1
72,540 + GFF3561 0.45 +0.4
72,540 + GFF3561 0.45 +0.6
72,540 + GFF3561 0.45 +1.1
72,540 + GFF3561 0.45 -0.2
72,541 - GFF3561 0.45 +0.4
72,541 - GFF3561 0.45 +0.3
72,541 - GFF3561 0.45 -0.5
72,541 - GFF3561 0.45 +0.1
72,588 + GFF3561 0.50 -0.1
72,630 + GFF3561 0.54 -0.9
72,630 + GFF3561 0.54 -0.5
72,630 + GFF3561 0.54 +0.7
72,630 + GFF3561 0.54 +0.9
72,630 + GFF3561 0.54 -0.1
72,630 + GFF3561 0.54 -0.7
72,630 + GFF3561 0.54 -0.0
72,630 + GFF3561 0.54 -0.6
72,630 + GFF3561 0.54 +0.0
72,630 + GFF3561 0.54 -0.7
72,631 - GFF3561 0.54 -0.1
72,631 - GFF3561 0.54 -0.3
72,631 - GFF3561 0.54 -0.0
72,631 - GFF3561 0.54 -0.6
72,631 - GFF3561 0.54 +0.0
72,631 - GFF3561 0.54 -0.3
72,631 - GFF3561 0.54 +0.2
72,631 - GFF3561 0.54 -1.3
72,843 + GFF3561 0.74 +0.2
72,843 + GFF3561 0.74 -0.3
72,843 + GFF3561 0.74 -0.4
72,844 - GFF3561 0.75 +0.0
72,844 - GFF3561 0.75 -0.1
72,844 - GFF3561 0.75 +0.5
72,846 + GFF3561 0.75 -0.7
73,153 + -0.7
73,154 - +0.5
73,229 + -0.3
73,230 - +0.2
73,763 + GFF3562 0.42 +0.3
73,835 + GFF3562 0.47 +0.1
73,835 + GFF3562 0.47 +0.7
73,836 - GFF3562 0.47 +0.5
73,836 - GFF3562 0.47 +0.2
73,988 + GFF3562 0.59 -0.3
74,267 + GFF3562 0.79 +0.1
74,267 + GFF3562 0.79 -0.2
74,268 - GFF3562 0.79 -2.4
74,268 - GFF3562 0.79 +0.5
74,469 - +1.1
74,504 + +0.5
74,504 + +0.7
74,505 - -0.5
74,505 - -0.1
74,507 + -0.4
74,507 + +0.9
74,507 + -0.4
74,508 - +0.9
74,609 + +0.7
74,609 + -0.2
74,861 + GFF3563 0.27 -0.9
74,975 + GFF3563 0.37 -0.5
74,975 + GFF3563 0.37 -0.3
74,976 - GFF3563 0.37 +0.2
74,976 - GFF3563 0.37 -0.3
74,981 + GFF3563 0.37 +0.1
74,981 + GFF3563 0.37 +1.9
74,981 + GFF3563 0.37 +0.2
74,982 - GFF3563 0.38 -0.0
74,982 - GFF3563 0.38 -0.1
74,982 - GFF3563 0.38 -0.4
74,982 - GFF3563 0.38 +0.9
75,077 + GFF3563 0.46 +0.9
75,078 - GFF3563 0.46 +1.3
75,263 + GFF3563 0.62 -0.2
75,263 + GFF3563 0.62 +0.3
75,263 + GFF3563 0.62 -0.5
75,500 + GFF3563 0.84 -0.2
75,500 + GFF3563 0.84 -1.8
75,501 - GFF3563 0.84 -0.9
75,501 - GFF3563 0.84 -0.9
75,501 - GFF3563 0.84 +0.7
75,501 - GFF3563 0.84 -1.0
75,501 - GFF3563 0.84 +0.5
75,501 - GFF3563 0.84 -0.0
75,501 - GFF3563 0.84 +0.3
75,503 + GFF3563 0.84 +0.1
75,503 + GFF3563 0.84 +0.3
75,503 + GFF3563 0.84 +0.9
75,504 - GFF3563 0.84 +1.3
75,504 - GFF3563 0.84 -0.3
75,504 - GFF3563 0.84 -0.2
75,504 - GFF3563 0.84 +0.1
75,504 - GFF3563 0.84 -0.3
75,504 - GFF3563 0.84 -0.5
75,504 - GFF3563 0.84 -0.6
75,504 - GFF3563 0.84 -0.5

Or see this region's nucleotide sequence