Strain Fitness in Variovorax sp. SCN45 around GFF3545

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
48,331	+		GFF3543	0.79	-1.1
48,331	+		GFF3543	0.79	-0.7
48,331	+		GFF3543	0.79	+0.1
48,331	+		GFF3543	0.79	-0.1
48,332	-		GFF3543	0.80	+0.3
48,332	-		GFF3543	0.80	-1.2
48,332	-		GFF3543	0.80	-0.5
48,350	+		GFF3543	0.83	-0.3
48,374	+		GFF3543	0.87	+0.8
48,374	+		GFF3543	0.87	+1.2
48,374	+		GFF3543	0.87	+0.4
48,374	+		GFF3543	0.87	-2.5
48,375	-		GFF3543	0.87	-0.9
48,375	-		GFF3543	0.87	-1.3
48,375	-		GFF3543	0.87	+0.7
48,375	-		GFF3543	0.87	+1.9
48,465	+				+0.5
48,465	+				+0.3
48,465	+				-0.6
48,465	+				-0.3
48,465	+				-0.3
48,465	+				+0.8
48,465	+				-0.3
48,466	-				-0.0
48,466	-				-0.5
48,466	-				-0.2
48,466	-				-0.3
48,483	+				-0.4
48,483	+				-0.7
48,483	+				-0.6
48,483	+				-0.1
48,483	+				+0.5
48,483	+				-0.5
48,484	-				-0.9
48,484	-				-1.2
48,484	-				-0.1
48,687	+		GFF3544	0.39	-1.3
48,687	+		GFF3544	0.39	-0.3
48,687	+		GFF3544	0.39	-0.5
48,687	+		GFF3544	0.39	-1.1
48,687	+		GFF3544	0.39	+0.5
48,687	+		GFF3544	0.39	-0.7
48,688	-		GFF3544	0.40	+0.2
48,688	-		GFF3544	0.40	-0.5
48,966	+		GFF3544	0.85	-0.7
48,966	+		GFF3544	0.85	+0.1
48,972	+		GFF3544	0.86	-0.5
48,972	+		GFF3544	0.86	-1.3
48,973	-		GFF3544	0.86	+0.8
49,074	+				-0.4
49,369	+		GFF3545	0.12	+0.7
49,369	+		GFF3545	0.12	+0.7
49,369	+		GFF3545	0.12	-0.7
49,370	-		GFF3545	0.12	+0.5
49,432	+		GFF3545	0.14	-0.5
49,432	+		GFF3545	0.14	-0.9
49,433	-		GFF3545	0.14	-0.7
49,465	+		GFF3545	0.16	-0.2
49,465	+		GFF3545	0.16	-0.8
49,465	+		GFF3545	0.16	-0.8
49,466	-		GFF3545	0.16	-0.2
49,466	-		GFF3545	0.16	-0.1
49,466	-		GFF3545	0.16	-0.5
49,471	+		GFF3545	0.16	-1.1
49,471	+		GFF3545	0.16	-0.6
49,471	+		GFF3545	0.16	-0.6
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	-1.2
49,471	+		GFF3545	0.16	-0.1
49,471	+		GFF3545	0.16	+1.1
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	+0.3
49,471	+		GFF3545	0.16	+0.1
49,471	+		GFF3545	0.16	-0.5
49,471	+		GFF3545	0.16	+0.9
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	+0.9
49,471	+		GFF3545	0.16	+1.6
49,471	+		GFF3545	0.16	-1.2
49,471	+		GFF3545	0.16	-0.5
49,471	+		GFF3545	0.16	+0.5
49,471	+		GFF3545	0.16	-0.9
49,472	-		GFF3545	0.16	-0.4
49,472	-		GFF3545	0.16	+0.1
49,472	-		GFF3545	0.16	-0.2
49,472	-		GFF3545	0.16	-0.9
49,472	-		GFF3545	0.16	+0.3
49,472	-		GFF3545	0.16	-0.4
49,472	-		GFF3545	0.16	-0.1
49,472	-		GFF3545	0.16	-2.7
49,472	-		GFF3545	0.16	-0.9
49,472	-		GFF3545	0.16	+0.4
49,472	-		GFF3545	0.16	+0.3
49,472	-		GFF3545	0.16	+1.3
49,472	-		GFF3545	0.16	-0.8
49,472	-		GFF3545	0.16	+0.0
49,472	-		GFF3545	0.16	-0.9
49,472	-		GFF3545	0.16	-1.8
49,472	-		GFF3545	0.16	+1.6
49,630	+		GFF3545	0.23	-0.4
49,630	+		GFF3545	0.23	-0.3
49,630	+		GFF3545	0.23	+0.2
49,630	+		GFF3545	0.23	-1.5
49,630	+		GFF3545	0.23	-0.7
49,630	+		GFF3545	0.23	-0.4
49,631	-		GFF3545	0.23	-0.7
49,631	-		GFF3545	0.23	+0.5
49,654	+		GFF3545	0.24	+1.5
49,654	+		GFF3545	0.24	-1.2
49,654	+		GFF3545	0.24	-0.1
49,654	+		GFF3545	0.24	-1.6
49,655	-		GFF3545	0.24	-1.0
49,655	-		GFF3545	0.24	-0.5
49,655	-		GFF3545	0.24	-0.7
49,655	-		GFF3545	0.24	-0.1
49,655	-		GFF3545	0.24	-0.3
49,655	-		GFF3545	0.24	-1.2
49,655	-		GFF3545	0.24	-0.6
49,723	+		GFF3545	0.27	-0.0
49,724	-		GFF3545	0.27	-0.1
49,724	-		GFF3545	0.27	+1.6
49,760	-		GFF3545	0.29	-0.3
49,933	+		GFF3545	0.36	+0.1
49,933	+		GFF3545	0.36	+0.1
49,933	+		GFF3545	0.36	-0.1
49,933	+		GFF3545	0.36	-0.6
49,933	+		GFF3545	0.36	+0.3
49,933	+		GFF3545	0.36	-0.9
49,933	+		GFF3545	0.36	-0.8
49,933	+		GFF3545	0.36	-0.1
49,934	-		GFF3545	0.36	+1.4
49,934	-		GFF3545	0.36	-0.1
49,934	-		GFF3545	0.36	-1.2
49,934	-		GFF3545	0.36	+0.3
49,948	+		GFF3545	0.37	-0.7
49,949	-		GFF3545	0.37	-0.3
50,071	+		GFF3545	0.42	-0.5
50,072	-		GFF3545	0.42	+1.1
50,072	-		GFF3545	0.42	-0.7
50,072	-		GFF3545	0.42	-0.6
50,072	-		GFF3545	0.42	-0.6
50,200	+		GFF3545	0.48	+0.3
50,200	+		GFF3545	0.48	-1.0
50,201	-		GFF3545	0.48	-0.1
50,242	+		GFF3545	0.50	-0.7
50,242	+		GFF3545	0.50	-1.1
50,243	-		GFF3545	0.50	-0.8
50,263	+		GFF3545	0.50	-0.9
50,263	+		GFF3545	0.50	-1.4
50,263	+		GFF3545	0.50	-0.0
50,284	+		GFF3545	0.51	-1.5
50,284	+		GFF3545	0.51	+0.3
50,284	+		GFF3545	0.51	-0.6
50,429	-		GFF3545	0.58	-0.2
50,494	+		GFF3545	0.60	+0.6
50,494	+		GFF3545	0.60	+0.3
50,494	+		GFF3545	0.60	+0.1
50,494	+		GFF3545	0.60	-0.6
50,494	+		GFF3545	0.60	-2.8
50,494	+		GFF3545	0.60	-0.1
50,494	+		GFF3545	0.60	-0.8
50,494	+		GFF3545	0.60	-0.9
50,495	-		GFF3545	0.61	+0.6
50,495	-		GFF3545	0.61	-0.2
50,495	-		GFF3545	0.61	-0.0
50,495	-		GFF3545	0.61	-0.3
50,495	-		GFF3545	0.61	+1.1
50,495	-		GFF3545	0.61	-0.1
50,497	+		GFF3545	0.61	-0.5
50,497	+		GFF3545	0.61	-1.3
50,497	+		GFF3545	0.61	+0.2
50,497	+		GFF3545	0.61	+0.2
50,497	+		GFF3545	0.61	+0.7
50,497	+		GFF3545	0.61	+1.0
50,498	-		GFF3545	0.61	-0.4
50,498	-		GFF3545	0.61	-0.0
50,498	-		GFF3545	0.61	-0.3
50,498	-		GFF3545	0.61	-0.3
50,498	-		GFF3545	0.61	+0.3
50,498	-		GFF3545	0.61	+1.1
50,498	-		GFF3545	0.61	-1.7
50,498	-		GFF3545	0.61	-1.1
50,498	-		GFF3545	0.61	-0.0
50,498	-		GFF3545	0.61	-1.0
50,498	-		GFF3545	0.61	-1.1
50,498	-		GFF3545	0.61	-0.1
50,500	+		GFF3545	0.61	-0.2
50,500	+		GFF3545	0.61	-0.7
50,500	+		GFF3545	0.61	-0.7
50,501	-		GFF3545	0.61	-0.5
50,501	-		GFF3545	0.61	-0.5
50,501	-		GFF3545	0.61	-0.2
50,501	-		GFF3545	0.61	+0.4
50,615	-		GFF3545	0.66	-1.7
50,728	+		GFF3545	0.71	-0.2
50,728	+		GFF3545	0.71	-0.0
50,728	+		GFF3545	0.71	-0.1
50,728	+		GFF3545	0.71	+0.0
50,728	+		GFF3545	0.71	+0.5
50,728	+		GFF3545	0.71	-0.6
50,729	-		GFF3545	0.71	-0.9
50,729	-		GFF3545	0.71	-0.4
50,729	-		GFF3545	0.71	+0.3
50,729	-		GFF3545	0.71	-0.5
50,729	-		GFF3545	0.71	+0.1
50,729	-		GFF3545	0.71	-0.2
50,761	+		GFF3545	0.72	-0.2
50,761	+		GFF3545	0.72	-0.4
50,761	+		GFF3545	0.72	+0.5
50,761	+		GFF3545	0.72	+1.5
50,761	+		GFF3545	0.72	+0.1
50,761	+		GFF3545	0.72	-0.2
50,761	+		GFF3545	0.72	-0.5
50,761	+		GFF3545	0.72	+0.6
50,761	+		GFF3545	0.72	+0.1
50,761	+		GFF3545	0.72	-0.1
50,761	+		GFF3545	0.72	+1.1
50,761	+		GFF3545	0.72	+0.3
50,762	-		GFF3545	0.72	-0.4
50,762	-		GFF3545	0.72	-0.8
50,762	-		GFF3545	0.72	-0.4
50,762	-		GFF3545	0.72	-1.1
50,762	-		GFF3545	0.72	-0.5
50,762	-		GFF3545	0.72	+0.4
50,762	-		GFF3545	0.72	-0.7
50,762	-		GFF3545	0.72	+0.3
50,762	-		GFF3545	0.72	-0.6
50,762	-		GFF3545	0.72	+0.9
50,762	-		GFF3545	0.72	-0.7
50,857	+		GFF3545	0.76	-0.1
50,857	+		GFF3545	0.76	-1.1
50,857	+		GFF3545	0.76	+0.5
50,857	+		GFF3545	0.76	-0.6
50,857	+		GFF3545	0.76	-1.9
50,858	-		GFF3545	0.76	-1.0
50,858	-		GFF3545	0.76	-0.7
50,941	+		GFF3545	0.80	-0.7
50,942	-		GFF3545	0.80	-1.8
50,942	-		GFF3545	0.80	+0.3
50,942	-		GFF3545	0.80	+0.3
50,942	-		GFF3545	0.80	-0.8
50,942	-		GFF3545	0.80	+0.5
50,948	-		GFF3545	0.80	-0.7
51,136	+		GFF3545	0.88	+0.9
51,136	+		GFF3545	0.88	-0.1
51,136	+		GFF3545	0.88	+0.3
51,464	+				+0.7
51,464	+				-0.4
51,464	+				+0.5
51,465	-				-0.5
51,465	-				-2.0
51,465	-				-0.3
51,482	+				-0.1
51,482	+				-1.6
51,482	+				-0.7
51,482	+				-0.3
51,482	+				-0.6
51,482	+				-0.9
51,482	+				-0.9
51,482	+				-0.2
51,482	+				-0.4
51,483	-				-0.4
51,483	-				+0.3
51,483	-				+1.0
51,483	-				-2.5
51,483	-				-0.5
51,483	-				-2.8
51,483	-				-1.6
51,483	-				+0.5
51,568	+		GFF3547	0.18	+0.9
51,568	+		GFF3547	0.18	-0.1
51,568	+		GFF3547	0.18	+0.3
51,568	+		GFF3547	0.18	+0.1
51,568	+		GFF3547	0.18	+0.4
51,569	-		GFF3547	0.19	+1.3
51,673	+				+0.5
51,674	-				-0.1
51,703	+				-1.3
51,704	-				-1.8
51,704	-				+1.3
51,726	-				-2.1
51,765	-				-0.6
51,776	+				+1.9
51,860	+				-0.5
51,860	+				+0.9
51,860	+				-0.5
51,860	+				+0.5
51,861	-				-1.1
51,861	-				-0.3
51,861	-				+0.9
51,861	-				-0.9
51,861	-				-0.5
51,861	-				-0.3
51,861	-				-0.1
51,998	+		GFF3546	0.15	-0.4
52,073	+		GFF3546	0.19	-1.9
52,073	+		GFF3546	0.19	-1.2
52,073	+		GFF3546	0.19	-0.6
52,073	+		GFF3546	0.19	-0.9
52,073	+		GFF3546	0.19	-0.6
52,073	+		GFF3546	0.19	-1.5
52,074	-		GFF3546	0.19	-0.6
52,074	-		GFF3546	0.19	-1.4
52,074	-		GFF3546	0.19	-0.8
52,074	-		GFF3546	0.19	-2.0
52,074	-		GFF3546	0.19	-0.0
52,074	-		GFF3546	0.19	-0.9
52,250	+		GFF3546	0.28	-1.1
52,250	+		GFF3546	0.28	+0.3
52,250	+		GFF3546	0.28	-1.0
52,250	+		GFF3546	0.28	-1.4
52,250	+		GFF3546	0.28	-2.3
52,251	-		GFF3546	0.28	-1.3
52,251	-		GFF3546	0.28	-0.8
52,251	-		GFF3546	0.28	-2.1
52,289	+		GFF3546	0.30	-1.3
52,289	+		GFF3546	0.30	-1.6
52,289	+		GFF3546	0.30	-0.5
52,289	+		GFF3546	0.30	-1.0
52,290	-		GFF3546	0.30	+0.1
52,290	-		GFF3546	0.30	-3.4
52,290	-		GFF3546	0.30	-0.4
52,290	-		GFF3546	0.30	-0.9
52,290	-		GFF3546	0.30	+0.0
52,290	-		GFF3546	0.30	-0.9