Strain Fitness in Variovorax sp. SCN45 around GFF3524

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3523 and GFF3524 are separated by 189 nucleotidesGFF3524 and GFF3525 are separated by 86 nucleotidesGFF3525 and GFF3526 overlap by 4 nucleotides GFF3523 - hypothetical protein, at 28,816 to 30,168 GFF3523 GFF3524 - Possible NADH oxidoreductase, at 30,358 to 31,494 GFF3524 GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117 GFF3525 GFF3526 - hypothetical protein, at 32,114 to 32,608 GFF3526 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.424 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.640 kb on - strand, within GFF3523at 29.828 kb on + strand, within GFF3523at 29.828 kb on + strand, within GFF3523at 29.952 kb on + strand, within GFF3523at 29.953 kb on - strand, within GFF3523at 30.032 kb on + strand, within GFF3523at 30.032 kb on + strand, within GFF3523at 30.231 kb on + strandat 30.232 kb on - strandat 30.260 kb on + strandat 30.260 kb on + strandat 30.359 kb on + strandat 30.425 kb on + strandat 30.425 kb on + strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.480 kb on - strand, within GFF3524at 30.480 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.653 kb on + strand, within GFF3524at 30.653 kb on + strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.681 kb on - strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.900 kb on + strand, within GFF3524at 31.115 kb on + strand, within GFF3524at 31.125 kb on - strand, within GFF3524at 31.125 kb on - strand, within GFF3524at 31.549 kb on - strandat 31.549 kb on - strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.654 kb on + strand, within GFF3525at 31.684 kb on + strand, within GFF3525at 31.684 kb on + strand, within GFF3525at 31.753 kb on + strand, within GFF3525at 31.754 kb on - strand, within GFF3525at 31.754 kb on - strand, within GFF3525at 32.409 kb on + strand, within GFF3526at 32.410 kb on - strand, within GFF3526at 32.416 kb on - strand, within GFF3526

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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29,360 + GFF3523 0.40 -0.3
29,360 + GFF3523 0.40 -1.3
29,360 + GFF3523 0.40 -1.9
29,360 + GFF3523 0.40 -0.2
29,360 + GFF3523 0.40 +0.5
29,360 + GFF3523 0.40 -1.0
29,360 + GFF3523 0.40 +0.9
29,360 + GFF3523 0.40 -0.9
29,360 + GFF3523 0.40 -0.4
29,360 + GFF3523 0.40 -0.2
29,361 - GFF3523 0.40 -1.3
29,361 - GFF3523 0.40 -0.0
29,361 - GFF3523 0.40 +0.0
29,361 - GFF3523 0.40 -0.6
29,361 - GFF3523 0.40 +0.2
29,361 - GFF3523 0.40 -0.3
29,424 + GFF3523 0.45 -0.1
29,522 + GFF3523 0.52 -0.5
29,522 + GFF3523 0.52 -0.6
29,522 + GFF3523 0.52 -0.5
29,522 + GFF3523 0.52 -0.9
29,523 - GFF3523 0.52 -1.1
29,523 - GFF3523 0.52 +0.3
29,523 - GFF3523 0.52 -0.4
29,523 - GFF3523 0.52 +0.1
29,523 - GFF3523 0.52 -1.0
29,639 + GFF3523 0.61 +0.1
29,639 + GFF3523 0.61 +0.5
29,639 + GFF3523 0.61 -0.7
29,640 - GFF3523 0.61 -1.2
29,828 + GFF3523 0.75 +0.2
29,828 + GFF3523 0.75 +0.9
29,952 + GFF3523 0.84 -0.2
29,953 - GFF3523 0.84 +0.1
30,032 + GFF3523 0.90 +1.9
30,032 + GFF3523 0.90 -0.4
30,231 + +0.5
30,232 - +0.8
30,260 + -0.9
30,260 + +0.3
30,359 + +0.8
30,425 + +0.5
30,425 + -0.8
30,426 - -0.3
30,426 - +0.1
30,426 - -0.5
30,426 - -0.2
30,479 + GFF3524 0.11 -0.3
30,479 + GFF3524 0.11 -0.5
30,479 + GFF3524 0.11 -0.9
30,479 + GFF3524 0.11 -0.5
30,479 + GFF3524 0.11 +0.4
30,480 - GFF3524 0.11 -0.2
30,480 - GFF3524 0.11 -0.8
30,648 - GFF3524 0.26 +0.3
30,648 - GFF3524 0.26 -0.4
30,648 - GFF3524 0.26 -1.5
30,648 - GFF3524 0.26 +0.9
30,648 - GFF3524 0.26 +1.9
30,653 + GFF3524 0.26 +0.1
30,653 + GFF3524 0.26 -0.6
30,654 - GFF3524 0.26 +0.2
30,654 - GFF3524 0.26 +0.3
30,654 - GFF3524 0.26 +0.1
30,654 - GFF3524 0.26 +1.4
30,654 - GFF3524 0.26 -0.1
30,681 - GFF3524 0.28 -0.2
30,689 + GFF3524 0.29 +1.3
30,689 + GFF3524 0.29 +0.7
30,689 + GFF3524 0.29 -0.2
30,690 - GFF3524 0.29 -0.7
30,690 - GFF3524 0.29 -0.0
30,690 - GFF3524 0.29 +1.5
30,690 - GFF3524 0.29 +1.2
30,690 - GFF3524 0.29 -0.8
30,848 + GFF3524 0.43 +0.2
30,848 + GFF3524 0.43 -0.4
30,848 + GFF3524 0.43 +0.1
30,848 + GFF3524 0.43 -0.3
30,848 + GFF3524 0.43 +0.1
30,848 + GFF3524 0.43 -0.3
30,848 + GFF3524 0.43 -0.7
30,848 + GFF3524 0.43 +0.4
30,848 + GFF3524 0.43 +0.3
30,848 + GFF3524 0.43 +0.4
30,848 + GFF3524 0.43 -1.1
30,849 - GFF3524 0.43 -0.4
30,849 - GFF3524 0.43 +0.1
30,849 - GFF3524 0.43 -0.9
30,849 - GFF3524 0.43 -1.1
30,849 - GFF3524 0.43 -1.6
30,849 - GFF3524 0.43 -0.2
30,849 - GFF3524 0.43 +0.7
30,900 + GFF3524 0.48 +1.7
31,115 + GFF3524 0.67 +0.1
31,125 - GFF3524 0.67 -0.2
31,125 - GFF3524 0.67 -0.1
31,549 - -0.8
31,549 - +0.2
31,550 + -0.9
31,550 + -0.2
31,550 + -0.5
31,550 + -1.6
31,550 + -1.8
31,550 + -0.1
31,550 + -1.5
31,550 + -0.4
31,550 + -0.1
31,550 + +0.7
31,550 + -1.8
31,551 - -1.6
31,551 - -0.8
31,551 - -0.7
31,551 - -0.3
31,551 - -0.4
31,551 - +0.3
31,654 + GFF3525 0.14 -0.7
31,684 + GFF3525 0.19 -0.8
31,684 + GFF3525 0.19 +0.6
31,753 + GFF3525 0.32 -1.5
31,754 - GFF3525 0.32 -0.4
31,754 - GFF3525 0.32 +0.2
32,409 + GFF3526 0.60 -0.3
32,410 - GFF3526 0.60 -0.5
32,416 - GFF3526 0.61 -1.1

Or see this region's nucleotide sequence