Strain Fitness in Variovorax sp. SCN45 around GFF3523

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3522 and GFF3523 are separated by 54 nucleotidesGFF3523 and GFF3524 are separated by 189 nucleotides GFF3522 - no description, at 27,580 to 28,761 GFF3522 GFF3523 - hypothetical protein, at 28,816 to 30,168 GFF3523 GFF3524 - Possible NADH oxidoreductase, at 30,358 to 31,494 GFF3524 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.153 kb on + strand, within GFF3522at 28.153 kb on + strand, within GFF3522at 28.153 kb on - strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.551 kb on + strand, within GFF3522at 28.551 kb on + strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.919 kb on - strandat 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.042 kb on + strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.070 kb on - strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.424 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.640 kb on - strand, within GFF3523at 29.828 kb on + strand, within GFF3523at 29.828 kb on + strand, within GFF3523at 29.952 kb on + strand, within GFF3523at 29.953 kb on - strand, within GFF3523at 30.032 kb on + strand, within GFF3523at 30.032 kb on + strand, within GFF3523at 30.231 kb on + strandat 30.232 kb on - strandat 30.260 kb on + strandat 30.260 kb on + strandat 30.359 kb on + strandat 30.425 kb on + strandat 30.425 kb on + strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.426 kb on - strandat 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.479 kb on + strand, within GFF3524at 30.480 kb on - strand, within GFF3524at 30.480 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.648 kb on - strand, within GFF3524at 30.653 kb on + strand, within GFF3524at 30.653 kb on + strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.654 kb on - strand, within GFF3524at 30.681 kb on - strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.689 kb on + strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.690 kb on - strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.848 kb on + strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.849 kb on - strand, within GFF3524at 30.900 kb on + strand, within GFF3524at 31.115 kb on + strand, within GFF3524at 31.125 kb on - strand, within GFF3524at 31.125 kb on - strand, within GFF3524

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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28,153 + GFF3522 0.48 -0.6
28,153 + GFF3522 0.48 +0.3
28,153 - GFF3522 0.48 -0.6
28,288 + GFF3522 0.60 -1.2
28,288 + GFF3522 0.60 -0.8
28,288 + GFF3522 0.60 +1.9
28,288 + GFF3522 0.60 -1.1
28,288 + GFF3522 0.60 -0.1
28,289 - GFF3522 0.60 -0.1
28,289 - GFF3522 0.60 -1.3
28,294 + GFF3522 0.60 +0.7
28,294 + GFF3522 0.60 +1.0
28,294 + GFF3522 0.60 +0.0
28,551 + GFF3522 0.82 -0.9
28,551 + GFF3522 0.82 +0.5
28,640 - GFF3522 0.90 -0.6
28,640 - GFF3522 0.90 -0.8
28,640 - GFF3522 0.90 +0.2
28,919 - -0.0
29,036 + GFF3523 0.16 +0.4
29,036 + GFF3523 0.16 -0.3
29,036 + GFF3523 0.16 -0.3
29,036 + GFF3523 0.16 +0.9
29,036 + GFF3523 0.16 -1.2
29,036 + GFF3523 0.16 +1.0
29,036 + GFF3523 0.16 -0.6
29,036 + GFF3523 0.16 +0.3
29,036 + GFF3523 0.16 -0.7
29,036 + GFF3523 0.16 -0.1
29,036 + GFF3523 0.16 -0.7
29,036 + GFF3523 0.16 +0.5
29,036 + GFF3523 0.16 +0.0
29,036 + GFF3523 0.16 -1.1
29,036 + GFF3523 0.16 -0.3
29,037 - GFF3523 0.16 +0.5
29,037 - GFF3523 0.16 -0.6
29,037 - GFF3523 0.16 +0.9
29,037 - GFF3523 0.16 -0.7
29,037 - GFF3523 0.16 -0.4
29,037 - GFF3523 0.16 -1.2
29,037 - GFF3523 0.16 +0.1
29,042 + GFF3523 0.17 -0.6
29,043 - GFF3523 0.17 -1.0
29,043 - GFF3523 0.17 +0.3
29,043 - GFF3523 0.17 -0.4
29,070 - GFF3523 0.19 +1.6
29,075 + GFF3523 0.19 +0.7
29,075 + GFF3523 0.19 -0.7
29,075 + GFF3523 0.19 -0.2
29,198 + GFF3523 0.28 -0.2
29,198 + GFF3523 0.28 -0.4
29,198 + GFF3523 0.28 +0.3
29,199 - GFF3523 0.28 +0.0
29,199 - GFF3523 0.28 -1.0
29,199 - GFF3523 0.28 -0.3
29,199 - GFF3523 0.28 -0.3
29,199 - GFF3523 0.28 -1.5
29,199 - GFF3523 0.28 -0.9
29,199 - GFF3523 0.28 -0.5
29,360 + GFF3523 0.40 -0.3
29,360 + GFF3523 0.40 -1.3
29,360 + GFF3523 0.40 -1.9
29,360 + GFF3523 0.40 -0.2
29,360 + GFF3523 0.40 +0.5
29,360 + GFF3523 0.40 -1.0
29,360 + GFF3523 0.40 +0.9
29,360 + GFF3523 0.40 -0.9
29,360 + GFF3523 0.40 -0.4
29,360 + GFF3523 0.40 -0.2
29,361 - GFF3523 0.40 -1.3
29,361 - GFF3523 0.40 -0.0
29,361 - GFF3523 0.40 +0.0
29,361 - GFF3523 0.40 -0.6
29,361 - GFF3523 0.40 +0.2
29,361 - GFF3523 0.40 -0.3
29,424 + GFF3523 0.45 -0.1
29,522 + GFF3523 0.52 -0.5
29,522 + GFF3523 0.52 -0.6
29,522 + GFF3523 0.52 -0.5
29,522 + GFF3523 0.52 -0.9
29,523 - GFF3523 0.52 -1.1
29,523 - GFF3523 0.52 +0.3
29,523 - GFF3523 0.52 -0.4
29,523 - GFF3523 0.52 +0.1
29,523 - GFF3523 0.52 -1.0
29,639 + GFF3523 0.61 +0.1
29,639 + GFF3523 0.61 +0.5
29,639 + GFF3523 0.61 -0.7
29,640 - GFF3523 0.61 -1.2
29,828 + GFF3523 0.75 +0.2
29,828 + GFF3523 0.75 +0.9
29,952 + GFF3523 0.84 -0.2
29,953 - GFF3523 0.84 +0.1
30,032 + GFF3523 0.90 +1.9
30,032 + GFF3523 0.90 -0.4
30,231 + +0.5
30,232 - +0.8
30,260 + -0.9
30,260 + +0.3
30,359 + +0.8
30,425 + +0.5
30,425 + -0.8
30,426 - -0.3
30,426 - +0.1
30,426 - -0.5
30,426 - -0.2
30,479 + GFF3524 0.11 -0.3
30,479 + GFF3524 0.11 -0.5
30,479 + GFF3524 0.11 -0.9
30,479 + GFF3524 0.11 -0.5
30,479 + GFF3524 0.11 +0.4
30,480 - GFF3524 0.11 -0.2
30,480 - GFF3524 0.11 -0.8
30,648 - GFF3524 0.26 +0.3
30,648 - GFF3524 0.26 -0.4
30,648 - GFF3524 0.26 -1.5
30,648 - GFF3524 0.26 +0.9
30,648 - GFF3524 0.26 +1.9
30,653 + GFF3524 0.26 +0.1
30,653 + GFF3524 0.26 -0.6
30,654 - GFF3524 0.26 +0.2
30,654 - GFF3524 0.26 +0.3
30,654 - GFF3524 0.26 +0.1
30,654 - GFF3524 0.26 +1.4
30,654 - GFF3524 0.26 -0.1
30,681 - GFF3524 0.28 -0.2
30,689 + GFF3524 0.29 +1.3
30,689 + GFF3524 0.29 +0.7
30,689 + GFF3524 0.29 -0.2
30,690 - GFF3524 0.29 -0.7
30,690 - GFF3524 0.29 -0.0
30,690 - GFF3524 0.29 +1.5
30,690 - GFF3524 0.29 +1.2
30,690 - GFF3524 0.29 -0.8
30,848 + GFF3524 0.43 +0.2
30,848 + GFF3524 0.43 -0.4
30,848 + GFF3524 0.43 +0.1
30,848 + GFF3524 0.43 -0.3
30,848 + GFF3524 0.43 +0.1
30,848 + GFF3524 0.43 -0.3
30,848 + GFF3524 0.43 -0.7
30,848 + GFF3524 0.43 +0.4
30,848 + GFF3524 0.43 +0.3
30,848 + GFF3524 0.43 +0.4
30,848 + GFF3524 0.43 -1.1
30,849 - GFF3524 0.43 -0.4
30,849 - GFF3524 0.43 +0.1
30,849 - GFF3524 0.43 -0.9
30,849 - GFF3524 0.43 -1.1
30,849 - GFF3524 0.43 -1.6
30,849 - GFF3524 0.43 -0.2
30,849 - GFF3524 0.43 +0.7
30,900 + GFF3524 0.48 +1.7
31,115 + GFF3524 0.67 +0.1
31,125 - GFF3524 0.67 -0.2
31,125 - GFF3524 0.67 -0.1

Or see this region's nucleotide sequence