Strain Fitness in Variovorax sp. SCN45 around GFF3499

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3497 and GFF3498 overlap by 4 nucleotidesGFF3498 and GFF3499 are separated by 24 nucleotidesGFF3499 and GFF3500 overlap by 11 nucleotidesGFF3500 and GFF3501 are separated by 232 nucleotides GFF3497 - Transcriptional regulator, Crp/Fnr family, at 3,092 to 3,871 GFF3497 GFF3498 - hypothetical protein, at 3,868 to 4,335 GFF3498 GFF3499 - Toxin HigB / Protein kinase domain of HipA, at 4,360 to 5,580 GFF3499 GFF3500 - no description, at 5,570 to 5,773 GFF3500 GFF3501 - Putative short-chain dehydrogenase, at 6,006 to 6,770 GFF3501 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.431 kb on + strand, within GFF3497at 3.432 kb on - strand, within GFF3497at 3.432 kb on - strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.695 kb on + strand, within GFF3497at 3.695 kb on + strand, within GFF3497at 3.696 kb on - strand, within GFF3497at 3.696 kb on - strand, within GFF3497at 3.773 kb on + strand, within GFF3497at 3.773 kb on + strand, within GFF3497at 3.774 kb on - strand, within GFF3497at 3.833 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.350 kb on - strandat 4.352 kb on - strandat 4.361 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.519 kb on + strand, within GFF3499at 4.520 kb on - strand, within GFF3499at 4.520 kb on - strand, within GFF3499at 4.634 kb on + strand, within GFF3499at 4.634 kb on + strand, within GFF3499at 4.635 kb on - strand, within GFF3499at 4.643 kb on + strand, within GFF3499at 4.644 kb on - strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.650 kb on - strand, within GFF3499at 4.650 kb on - strand, within GFF3499at 4.709 kb on + strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.721 kb on + strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.853 kb on + strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 5.060 kb on + strand, within GFF3499at 5.061 kb on - strand, within GFF3499at 5.168 kb on + strand, within GFF3499at 5.168 kb on + strand, within GFF3499at 5.169 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.427 kb on - strand, within GFF3499at 5.427 kb on - strand, within GFF3499at 5.501 kb on + strandat 5.967 kb on + strandat 5.980 kb on + strandat 5.980 kb on + strandat 5.981 kb on - strandat 5.981 kb on - strandat 5.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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3,365 + GFF3497 0.35 +0.9
3,365 + GFF3497 0.35 -0.5
3,365 + GFF3497 0.35 -1.6
3,365 + GFF3497 0.35 +0.5
3,366 - GFF3497 0.35 +0.7
3,366 - GFF3497 0.35 -0.1
3,366 - GFF3497 0.35 -0.3
3,431 + GFF3497 0.43 +0.3
3,432 - GFF3497 0.44 +0.2
3,432 - GFF3497 0.44 -0.1
3,647 + GFF3497 0.71 +0.9
3,647 + GFF3497 0.71 -0.4
3,647 + GFF3497 0.71 -1.1
3,695 + GFF3497 0.77 -0.5
3,695 + GFF3497 0.77 -0.2
3,696 - GFF3497 0.77 -0.5
3,696 - GFF3497 0.77 +0.2
3,773 + GFF3497 0.87 -1.1
3,773 + GFF3497 0.87 -0.7
3,774 - GFF3497 0.87 -0.9
3,833 + -0.4
4,349 + -1.0
4,349 + -0.3
4,349 + -1.6
4,349 + -0.2
4,349 + -1.6
4,349 + -0.5
4,350 - -0.8
4,352 - +0.5
4,361 + +0.1
4,376 + -0.5
4,376 + -0.1
4,376 + +0.1
4,376 + +0.3
4,376 + -0.9
4,376 + -0.3
4,377 - -0.2
4,377 - +0.1
4,377 - +0.1
4,377 - -1.2
4,377 - -1.9
4,377 - -0.5
4,377 - +0.2
4,377 - +0.2
4,519 + GFF3499 0.13 +0.9
4,520 - GFF3499 0.13 -0.5
4,520 - GFF3499 0.13 -0.7
4,634 + GFF3499 0.22 +0.9
4,634 + GFF3499 0.22 -0.6
4,635 - GFF3499 0.23 -0.5
4,643 + GFF3499 0.23 +0.0
4,644 - GFF3499 0.23 +0.2
4,649 + GFF3499 0.24 -0.0
4,649 + GFF3499 0.24 +0.1
4,649 + GFF3499 0.24 -0.3
4,649 + GFF3499 0.24 -0.1
4,649 + GFF3499 0.24 -0.4
4,649 + GFF3499 0.24 +0.6
4,649 + GFF3499 0.24 -0.5
4,649 + GFF3499 0.24 -0.1
4,649 + GFF3499 0.24 +1.1
4,650 - GFF3499 0.24 -0.0
4,650 - GFF3499 0.24 +0.5
4,709 + GFF3499 0.29 -1.5
4,710 - GFF3499 0.29 -0.5
4,710 - GFF3499 0.29 -1.1
4,710 - GFF3499 0.29 -1.6
4,710 - GFF3499 0.29 +0.1
4,710 - GFF3499 0.29 -0.5
4,721 + GFF3499 0.30 -0.0
4,722 - GFF3499 0.30 -0.8
4,722 - GFF3499 0.30 -0.1
4,722 - GFF3499 0.30 -0.3
4,722 - GFF3499 0.30 -0.1
4,814 + GFF3499 0.37 -0.5
4,814 + GFF3499 0.37 +0.5
4,814 + GFF3499 0.37 -0.1
4,815 - GFF3499 0.37 +0.2
4,815 - GFF3499 0.37 -0.7
4,815 - GFF3499 0.37 +0.3
4,841 + GFF3499 0.39 -0.0
4,841 + GFF3499 0.39 -1.3
4,841 + GFF3499 0.39 -1.3
4,853 + GFF3499 0.40 -1.7
4,854 - GFF3499 0.40 +1.3
4,854 - GFF3499 0.40 -0.2
4,854 - GFF3499 0.40 -0.5
4,854 - GFF3499 0.40 -0.7
5,060 + GFF3499 0.57 -0.6
5,061 - GFF3499 0.57 +0.4
5,168 + GFF3499 0.66 -0.9
5,168 + GFF3499 0.66 -0.5
5,169 - GFF3499 0.66 -0.6
5,205 - GFF3499 0.69 -0.6
5,205 - GFF3499 0.69 -0.7
5,205 - GFF3499 0.69 -1.0
5,205 - GFF3499 0.69 +0.6
5,215 + GFF3499 0.70 -2.6
5,215 + GFF3499 0.70 +0.4
5,215 + GFF3499 0.70 -0.4
5,215 + GFF3499 0.70 -1.0
5,216 - GFF3499 0.70 -1.2
5,216 - GFF3499 0.70 -0.1
5,216 - GFF3499 0.70 -0.3
5,216 - GFF3499 0.70 +2.5
5,216 - GFF3499 0.70 -0.3
5,216 - GFF3499 0.70 -1.0
5,369 + GFF3499 0.83 -0.9
5,369 + GFF3499 0.83 -0.4
5,369 + GFF3499 0.83 -0.3
5,370 - GFF3499 0.83 +0.3
5,370 - GFF3499 0.83 -0.5
5,370 - GFF3499 0.83 -1.2
5,370 - GFF3499 0.83 +0.4
5,370 - GFF3499 0.83 -1.2
5,370 - GFF3499 0.83 -0.1
5,426 + GFF3499 0.87 +0.6
5,426 + GFF3499 0.87 -0.8
5,426 + GFF3499 0.87 -0.6
5,426 + GFF3499 0.87 -1.5
5,426 + GFF3499 0.87 +0.6
5,426 + GFF3499 0.87 +2.3
5,426 + GFF3499 0.87 -2.3
5,427 - GFF3499 0.87 +0.3
5,427 - GFF3499 0.87 -0.3
5,501 + +0.5
5,967 + +0.2
5,980 + -0.1
5,980 + -0.5
5,981 - -0.7
5,981 - +0.6
5,981 - -0.2

Or see this region's nucleotide sequence