Strain Fitness in Variovorax sp. SCN45 around GFF3385

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3383 and GFF3384 are separated by 34 nucleotidesGFF3384 and GFF3385 are separated by 9 nucleotidesGFF3385 and GFF3386 are separated by 371 nucleotides GFF3383 - no description, at 204,299 to 204,682 GFF3383 GFF3384 - Transcriptional regulator, Crp/Fnr family, at 204,717 to 205,427 GFF3384 GFF3385 - Flavin-containing monooxygenase, at 205,437 to 207,248 GFF3385 GFF3386 - hypothetical protein, at 207,620 to 209,011 GFF3386 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -2 -1 0 1at 204.680 kb on + strandat 204.681 kb on - strandat 205.171 kb on - strand, within GFF3384at 205.171 kb on - strand, within GFF3384at 205.468 kb on + strandat 205.469 kb on - strandat 205.469 kb on - strandat 205.528 kb on + strandat 205.528 kb on + strandat 205.735 kb on + strand, within GFF3385at 205.735 kb on + strand, within GFF3385at 205.736 kb on - strand, within GFF3385at 205.736 kb on - strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.874 kb on - strand, within GFF3385at 205.894 kb on + strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.963 kb on + strand, within GFF3385at 205.963 kb on + strand, within GFF3385at 205.964 kb on - strand, within GFF3385at 205.996 kb on + strand, within GFF3385at 205.997 kb on - strand, within GFF3385at 205.997 kb on - strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.030 kb on - strand, within GFF3385at 206.476 kb on + strand, within GFF3385at 206.477 kb on - strand, within GFF3385at 206.477 kb on - strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.584 kb on + strand, within GFF3385at 206.585 kb on - strand, within GFF3385at 206.617 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.960 kb on + strand, within GFF3385at 207.446 kb on + strandat 207.447 kb on - strandat 207.460 kb on + strandat 207.460 kb on + strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.530 kb on - strandat 207.538 kb on - strandat 207.554 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.596 kb on - strandat 207.833 kb on + strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.996 kb on - strand, within GFF3386at 208.080 kb on - strand, within GFF3386at 208.142 kb on + strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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204,680 + -0.7
204,681 - -0.2
205,171 - GFF3384 0.64 +0.2
205,171 - GFF3384 0.64 +0.9
205,468 + +0.6
205,469 - -0.2
205,469 - -0.5
205,528 + +0.5
205,528 + -0.5
205,735 + GFF3385 0.16 +0.2
205,735 + GFF3385 0.16 -0.6
205,736 - GFF3385 0.17 -0.8
205,736 - GFF3385 0.17 +0.6
205,870 + GFF3385 0.24 -0.8
205,870 + GFF3385 0.24 -1.0
205,870 + GFF3385 0.24 +0.3
205,870 + GFF3385 0.24 +0.5
205,870 + GFF3385 0.24 +0.5
205,871 - GFF3385 0.24 -0.2
205,871 - GFF3385 0.24 +0.0
205,871 - GFF3385 0.24 +0.6
205,871 - GFF3385 0.24 -0.2
205,871 - GFF3385 0.24 -0.4
205,871 - GFF3385 0.24 -0.1
205,874 - GFF3385 0.24 +0.4
205,894 + GFF3385 0.25 -2.0
205,895 - GFF3385 0.25 +0.1
205,895 - GFF3385 0.25 -0.5
205,895 - GFF3385 0.25 -0.7
205,963 + GFF3385 0.29 +0.4
205,963 + GFF3385 0.29 -1.0
205,964 - GFF3385 0.29 +1.6
205,996 + GFF3385 0.31 -0.1
205,997 - GFF3385 0.31 +0.7
205,997 - GFF3385 0.31 -0.3
206,029 + GFF3385 0.33 +0.2
206,029 + GFF3385 0.33 -0.7
206,029 + GFF3385 0.33 +0.1
206,029 + GFF3385 0.33 +0.5
206,030 - GFF3385 0.33 -0.5
206,476 + GFF3385 0.57 +1.4
206,477 - GFF3385 0.57 -0.2
206,477 - GFF3385 0.57 +0.6
206,500 + GFF3385 0.59 -0.1
206,500 + GFF3385 0.59 -0.0
206,500 + GFF3385 0.59 -0.1
206,500 + GFF3385 0.59 -0.2
206,500 + GFF3385 0.59 +0.1
206,500 + GFF3385 0.59 -0.3
206,500 + GFF3385 0.59 -0.3
206,500 + GFF3385 0.59 +0.3
206,501 - GFF3385 0.59 +0.6
206,501 - GFF3385 0.59 -0.8
206,501 - GFF3385 0.59 -0.8
206,501 - GFF3385 0.59 -0.4
206,569 + GFF3385 0.62 -0.1
206,569 + GFF3385 0.62 +1.0
206,569 + GFF3385 0.62 +0.3
206,569 + GFF3385 0.62 -0.5
206,569 + GFF3385 0.62 +0.0
206,569 + GFF3385 0.62 -1.3
206,569 + GFF3385 0.62 -1.0
206,570 - GFF3385 0.63 -0.0
206,570 - GFF3385 0.63 +0.5
206,570 - GFF3385 0.63 -0.2
206,570 - GFF3385 0.63 +1.3
206,570 - GFF3385 0.63 -0.2
206,570 - GFF3385 0.63 -1.2
206,584 + GFF3385 0.63 -0.2
206,585 - GFF3385 0.63 +1.3
206,617 + GFF3385 0.65 -1.8
206,755 + GFF3385 0.73 -0.2
206,755 + GFF3385 0.73 +0.7
206,755 + GFF3385 0.73 +0.0
206,960 + GFF3385 0.84 +0.1
207,446 + +0.1
207,447 - +0.5
207,460 + -0.5
207,460 + -0.2
207,461 - -0.6
207,461 - +1.5
207,461 - +0.1
207,530 - -0.2
207,538 - +1.0
207,554 + +1.3
207,595 + +0.6
207,595 + -0.5
207,595 + -0.9
207,595 + -1.1
207,596 - -1.6
207,833 + GFF3386 0.15 +0.2
207,834 - GFF3386 0.15 -0.6
207,834 - GFF3386 0.15 +1.1
207,834 - GFF3386 0.15 -0.3
207,834 - GFF3386 0.15 +0.1
207,964 + GFF3386 0.25 +1.0
207,964 + GFF3386 0.25 -0.2
207,995 + GFF3386 0.27 -0.3
207,995 + GFF3386 0.27 -0.1
207,995 + GFF3386 0.27 -0.1
207,995 + GFF3386 0.27 -0.2
207,995 + GFF3386 0.27 +0.3
207,995 + GFF3386 0.27 -1.8
207,995 + GFF3386 0.27 -1.0
207,996 - GFF3386 0.27 +0.3
208,080 - GFF3386 0.33 -0.0
208,142 + GFF3386 0.38 -1.0
208,143 - GFF3386 0.38 -0.1
208,143 - GFF3386 0.38 +1.5
208,143 - GFF3386 0.38 +0.0
208,143 - GFF3386 0.38 -0.3
208,143 - GFF3386 0.38 -0.1
208,208 + GFF3386 0.42 +1.0
208,208 + GFF3386 0.42 -0.9
208,208 + GFF3386 0.42 -0.5
208,208 + GFF3386 0.42 -0.9
208,208 + GFF3386 0.42 -0.5
208,208 + GFF3386 0.42 +0.1
208,208 + GFF3386 0.42 -1.6
208,209 - GFF3386 0.42 +0.3
208,209 - GFF3386 0.42 -0.5
208,209 - GFF3386 0.42 -0.8

Or see this region's nucleotide sequence